Co-expression analysis

Gene ID At5g26280
Gene name meprin and TRAF homology domain-containing protein / MATH domain-containing protein
Module size 9 genes
NF 0.68
%ile 87.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5570.61.00At5g26280832697meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOMO.I.H.G.S.X.
0.8290.90.83At3g09260820082PYK10Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.O.I.H.G.S.X.
0.8290.90.83At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.O.I.H.G.S.X.
0.7888.60.88At3g16460820894jacalin lectin family proteinF:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVAO.I.H.G.S.X.
0.7888.60.82At3g20370821582meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFO.I.H.G.S.X.
0.7184.20.78At1g54000841838myrosinase-associated protein, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFMO.I.H.G.S.X.
0.6176.70.81At2g22770816807NAI1regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.O.I.H.G.S.X.
0.6176.70.82At4g27860828899integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBFO.I.H.G.S.X.
0.5773.80.77At3g16450820893jacalin lectin family proteinF:molecular_function unknown;P:response to cold;C:nucleus;POO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.999.5E-MEXP-1138-raw-cel-1432773130
16.399.5E-MEXP-1138-raw-cel-1432773098
15.899.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.799.5E-MEXP-1138-raw-cel-1432772586
15.699.5E-MEXP-285-raw-cel-440782725
15.399.4GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
14.899.4E-MEXP-1138-raw-cel-1432773002
14.899.4GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
14.599.4E-MEXP-1138-raw-cel-1432772522
14.499.4E-MEXP-1138-raw-cel-1432772746
14.099.4E-MEXP-1138-raw-cel-1432772554
13.999.4GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
13.799.4E-MEXP-1138-raw-cel-1432773034
13.599.4GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
13.499.4E-MEXP-1138-raw-cel-1432773066
13.299.4E-MEXP-1138-raw-cel-1432772778
13.199.4E-MEXP-1138-raw-cel-1432772810
13.199.4GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
13.099.4E-MEXP-1138-raw-cel-1432772970
12.999.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.999.3E-MEXP-1138-raw-cel-1432772906
12.899.3E-MEXP-1138-raw-cel-1432772874
12.799.3E-MEXP-285-raw-cel-440782791
12.799.3E-MEXP-1138-raw-cel-1432772938
12.699.3E-MEXP-1138-raw-cel-1432772714
11.899.3E-MEXP-1138-raw-cel-1432772618
11.899.3E-MEXP-1138-raw-cel-1432772650
11.899.3E-MEXP-1138-raw-cel-1432773226
11.699.3E-ATMX-35-raw-cel-1574334880
11.499.3E-MEXP-1138-raw-cel-1432772682
11.299.2GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.199.2E-MEXP-1138-raw-cel-1432772842
10.899.2E-MEXP-1138-raw-cel-1432773322
10.499.2GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.499.2E-MEXP-1138-raw-cel-1432773258
10.299.2E-MEXP-1138-raw-cel-1432773354
10.099.2E-MEXP-1138-raw-cel-1432773290
10.099.2E-MEXP-1138-raw-cel-1432773162
9.999.1E-ATMX-35-raw-cel-1574334864
9.599.1GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.499.1GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
8.999.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
8.799.0GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2001GO:0080119A process that is carried out at the cellular level which results in the formation of ER (endoplasmic reticulum) body. ER body is a compartment found in plant cells that is derived from the ER. The structures have a characteristic shape and size (10 mm long and 0.5 mm wide) and are surrounded with ribosomes. They have been found in Arabidopsis thaliana and related Brassicaceae species.Link to AmiGO
0.1111GO:0009610A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic fungus, a fungus living in close physical association with another organism.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage