Co-expression analysis

Gene ID At5g24660
Gene name LSU2 (RESPONSE TO LOW SULFUR 2)
Module size 11 genes
NF 0.61
%ile 82.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4862.51.00At5g24660832538LSU2 (RESPONSE TO LOW SULFUR 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.7586.90.67At2g20800816609NDB4 (NAD(P)H dehydrogenase B4)F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAMO.I.H.G.S.X.
0.7284.80.57At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.H.G.S.X.
0.7083.50.63At2g04000814926transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.66At1g71380843479ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOFO.I.H.G.S.X.
0.7083.50.60At2g01610814690invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6478.90.61At1g3624084053060S ribosomal protein L30 (RPL30A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPBO.I.H.G.S.X.
0.5873.80.71At1g22090838814emb2204 (embryo defective 2204)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.67At5g11410831012protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.H.G.S.X.
0.5065.30.71At2g47260819339WRKY23member of WRKY Transcription Factor; Group IO.I.H.G.S.X.
0.4761.20.63At1g68360843165zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PMOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.399.7GSM226540L10SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
35.399.7GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
35.099.7GSM226541L11SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
23.099.6GSM184845Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
14.099.4GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
13.399.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.099.4GSM184846Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
11.699.3GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
10.799.2GSM184838Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
9.099.1GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
8.699.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.047100040Pentose and glucuronate interconversionsLink to KEGG PATHWAY
0.008103010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage