CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g23480

Gene name DNA binding

Module size 59 genes

NF 0.88

%ile 98.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At5g23480 832414 DNA binding F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P O.I. H.G. S.X.
0.97 97.6 0.95 At3g49450 824107 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.97 97.6 0.95 At4g20500 827798 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.95 97.0 0.94 At5g60250 836147 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. H.G. S.X.
0.95 97.0 0.90 At3g12060 820380 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. H.G. S.X.
0.94 96.7 0.96 At3g01015 821318 - F:unknown;P:unknown;C:unknown;PMOF O.I. H.G. S.X.
0.94 96.7 0.96 At5g27610 832823 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV O.I. H.G. S.X.
0.94 96.7 0.92 At1g23210 838930 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. H.G. S.X.
0.94 96.7 0.92 At5g49150 834974 GEX2 (GAMETE EXPRESSED 2) Encodes a transmembrane domain containing protein expressed in sperm cells. O.I. H.G. S.X.
0.94 96.7 0.93 At2g44190 819026 EDE1 (ENDOSPERM DEFECTIVE 1) Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. O.I. H.G. S.X.
0.94 96.7 0.93 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA O.I. H.G. S.X.
0.93 96.4 0.94 At3g60760 825247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.93 96.4 0.89 At4g39753 830132 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF O.I. H.G. S.X.
0.93 96.4 0.87 At4g00240 826673 PLDBETA2 member of C2-PLD subfamily O.I. H.G. S.X.
0.93 96.4 0.90 At4g35560 829708 - F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB O.I. H.G. S.X.
0.93 96.4 0.91 At1g52920 841725 GPCR (G PROTEIN COUPLED RECEPTOR) Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses. O.I. H.G. S.X.
0.93 96.4 0.92 At2g17090 816214 SSP (SHORT SUSPENSOR) F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF O.I. H.G. S.X.
0.93 96.4 0.89 At2g22600 816791 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO O.I. H.G. S.X.
0.92 96.0 0.95 At5g58190 835931 ECT10 F:unknown;P:unknown;C:unknown;MPFO O.I. H.G. S.X.
0.92 96.0 0.94 At1g77410 844078 BGAL16 (beta-galactosidase 16) F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA O.I. H.G. S.X.
0.92 96.0 0.93 At4g08590 826420 ORTHL (ORTHRUS-LIKE) F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBV O.I. H.G. S.X.
0.91 95.6 0.91 At1g54240 841865 DNA binding F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;P O.I. H.G. S.X.
0.91 95.6 0.87 At5g67080 836843 MAPKKK19 member of MEKK subfamily O.I. H.G. S.X.
0.90 95.1 0.92 At2g06040 815159 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.90 95.1 0.92 At1g64610 842769 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPA O.I. H.G. S.X.
0.90 95.1 0.91 At5g10950 830962 cylicin-related F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. H.G. S.X.
0.90 95.1 0.89 At1g12370 837792 PHR1 (PHOTOLYASE 1) encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele O.I. H.G. S.X.
0.90 95.1 0.93 At1g48310 841251 CHR18 F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.90 95.1 0.91 At5g05510 830434 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. H.G. S.X.
0.89 94.6 0.90 At5g59200 836038 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:endomembrane system;POMF O.I. H.G. S.X.
0.89 94.6 0.92 At4g17483 827461 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. H.G. S.X.
0.89 94.6 0.87 At5g42010 834206 WD-40 repeat family protein F:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPA O.I. H.G. S.X.
0.89 94.6 0.92 At5g16100 831467 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.88 94.0 0.92 At1g77250 844061 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO O.I. H.G. S.X.
0.88 94.0 0.91 At5g49900 835053 catalytic/ glucosylceramidase F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOA O.I. H.G. S.X.
0.88 94.0 0.91 At1g26840 839227 ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. O.I. H.G. S.X.
0.88 94.0 0.87 At1g55410 3767461 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.88 94.0 0.88 At1g68120 843140 BPC3 (BASIC PENTACYSTEINE 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P O.I. H.G. S.X.
0.87 93.5 0.92 At2g25560 817094 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV O.I. H.G. S.X.
0.87 93.5 0.92 At5g16630 831525 RAD4 F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOP O.I. H.G. S.X.
0.87 93.5 0.87 At5g09800 830840 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF O.I. H.G. S.X.
0.87 93.5 0.88 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family O.I. H.G. S.X.
0.87 93.5 0.92 At2g36660 818238 PAB7 (POLY(A) BINDING PROTEIN 7) polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins. O.I. H.G. S.X.
0.87 93.5 0.92 At4g30860 829210 SDG4 (SET DOMAIN GROUP 4) Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects. O.I. H.G. S.X.
0.86 93.1 0.91 At1g79950 844335 helicase-related F:in 6 functions;P:regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion;MBOFAPV O.I. H.G. S.X.
0.86 93.1 0.93 At5g55490 835642 GEX1 (GAMETE EXPRESSED PROTEIN 1) Encodes a transmembrane domain containing protein that is expressed in pollen germ cells. O.I. H.G. S.X.
0.86 93.1 0.88 At5g52340 835310 ATEXO70A2 (exocyst subunit EXO70 family protein A2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. H.G. S.X.
0.85 92.4 0.93 At3g22760 821847 SOL1 CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules. O.I. H.G. S.X.
0.85 92.4 0.87 At1g75770 843910 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.85 92.4 0.88 At5g28340 832919 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. H.G. S.X.
0.84 91.9 0.91 At1g50810 3767429 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.84 91.9 0.91 At5g07810 830674 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein F:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVA O.I. H.G. S.X.
0.81 90.4 0.89 At2g30580 817608 DRIP2 (DREB2A-INTERACTING PROTEIN 2) Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. O.I. H.G. S.X.
0.79 89.1 0.88 At5g18620 831980 CHR17 (CHROMATIN REMODELING FACTOR17) F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVA O.I. H.G. S.X.
0.75 86.9 0.87 At2g46040 819212 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein F:DNA binding;P:biological_process unknown;C:intracellular;PMOF O.I. H.G. S.X.
0.75 86.9 0.89 At4g32440 829379 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.75 86.9 0.90 At3g48440 824003 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. H.G. S.X.
0.72 84.8 0.87 At1g70590 843396 F-box family protein F:binding;P:biological_process unknown;C:chloroplast;BOFMPV O.I. H.G. S.X.
0.69 82.9 0.88 At5g05130 830395 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 7 functions;P:unknown;C:unknown;MOBFPVA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At5g23480	832414	DNA binding	F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P	O.I.	H.G.	S.X.
0.97	97.6	0.95	At3g49450	824107	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.97	97.6	0.95	At4g20500	827798	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.95	97.0	0.94	At5g60250	836147	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	H.G.	S.X.
0.95	97.0	0.90	At3g12060	820380	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	H.G.	S.X.
0.94	96.7	0.96	At3g01015	821318	-	F:unknown;P:unknown;C:unknown;PMOF	O.I.	H.G.	S.X.
0.94	96.7	0.96	At5g27610	832823	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV	O.I.	H.G.	S.X.
0.94	96.7	0.92	At1g23210	838930	AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	H.G.	S.X.
0.94	96.7	0.92	At5g49150	834974	GEX2 (GAMETE EXPRESSED 2)	Encodes a transmembrane domain containing protein expressed in sperm cells.	O.I.	H.G.	S.X.
0.94	96.7	0.93	At2g44190	819026	EDE1 (ENDOSPERM DEFECTIVE 1)	Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.	O.I.	H.G.	S.X.
0.94	96.7	0.93	At1g08600	837382	ATRX	F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA	O.I.	H.G.	S.X.
0.93	96.4	0.94	At3g60760	825247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.93	96.4	0.89	At4g39753	830132	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF	O.I.	H.G.	S.X.
0.93	96.4	0.87	At4g00240	826673	PLDBETA2	member of C2-PLD subfamily	O.I.	H.G.	S.X.
0.93	96.4	0.90	At4g35560	829708	-	F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB	O.I.	H.G.	S.X.
0.93	96.4	0.91	At1g52920	841725	GPCR (G PROTEIN COUPLED RECEPTOR)	Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.	O.I.	H.G.	S.X.
0.93	96.4	0.92	At2g17090	816214	SSP (SHORT SUSPENSOR)	F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF	O.I.	H.G.	S.X.
0.93	96.4	0.89	At2g22600	816791	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO	O.I.	H.G.	S.X.
0.92	96.0	0.95	At5g58190	835931	ECT10	F:unknown;P:unknown;C:unknown;MPFO	O.I.	H.G.	S.X.
0.92	96.0	0.94	At1g77410	844078	BGAL16 (beta-galactosidase 16)	F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA	O.I.	H.G.	S.X.
0.92	96.0	0.93	At4g08590	826420	ORTHL (ORTHRUS-LIKE)	F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBV	O.I.	H.G.	S.X.
0.91	95.6	0.91	At1g54240	841865	DNA binding	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;P	O.I.	H.G.	S.X.
0.91	95.6	0.87	At5g67080	836843	MAPKKK19	member of MEKK subfamily	O.I.	H.G.	S.X.
0.90	95.1	0.92	At2g06040	815159	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	H.G.	S.X.
0.90	95.1	0.92	At1g64610	842769	WD-40 repeat family protein	F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPA	O.I.	H.G.	S.X.
0.90	95.1	0.91	At5g10950	830962	cylicin-related	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	O.I.	H.G.	S.X.
0.90	95.1	0.89	At1g12370	837792	PHR1 (PHOTOLYASE 1)	encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele	O.I.	H.G.	S.X.
0.90	95.1	0.93	At1g48310	841251	CHR18	F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.90	95.1	0.91	At5g05510	830434	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	H.G.	S.X.
0.89	94.6	0.90	At5g59200	836038	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:endomembrane system;POMF	O.I.	H.G.	S.X.
0.89	94.6	0.92	At4g17483	827461	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	H.G.	S.X.
0.89	94.6	0.87	At5g42010	834206	WD-40 repeat family protein	F:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPA	O.I.	H.G.	S.X.
0.89	94.6	0.92	At5g16100	831467	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.88	94.0	0.92	At1g77250	844061	PHD finger family protein	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO	O.I.	H.G.	S.X.
0.88	94.0	0.91	At5g49900	835053	catalytic/ glucosylceramidase	F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOA	O.I.	H.G.	S.X.
0.88	94.0	0.91	At1g26840	839227	ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6)	Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors.	O.I.	H.G.	S.X.
0.88	94.0	0.87	At1g55410	3767461	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.88	94.0	0.88	At1g68120	843140	BPC3 (BASIC PENTACYSTEINE 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P	O.I.	H.G.	S.X.
0.87	93.5	0.92	At2g25560	817094	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV	O.I.	H.G.	S.X.
0.87	93.5	0.92	At5g16630	831525	RAD4	F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOP	O.I.	H.G.	S.X.
0.87	93.5	0.87	At5g09800	830840	U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF	O.I.	H.G.	S.X.
0.87	93.5	0.88	At4g32500	829385	AKT5	member of Stelar K+ outward rectifying channel (SKOR) family	O.I.	H.G.	S.X.
0.87	93.5	0.92	At2g36660	818238	PAB7 (POLY(A) BINDING PROTEIN 7)	polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.	O.I.	H.G.	S.X.
0.87	93.5	0.92	At4g30860	829210	SDG4 (SET DOMAIN GROUP 4)	Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.	O.I.	H.G.	S.X.
0.86	93.1	0.91	At1g79950	844335	helicase-related	F:in 6 functions;P:regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion;MBOFAPV	O.I.	H.G.	S.X.
0.86	93.1	0.93	At5g55490	835642	GEX1 (GAMETE EXPRESSED PROTEIN 1)	Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	O.I.	H.G.	S.X.
0.86	93.1	0.88	At5g52340	835310	ATEXO70A2 (exocyst subunit EXO70 family protein A2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	H.G.	S.X.
0.85	92.4	0.93	At3g22760	821847	SOL1	CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules.	O.I.	H.G.	S.X.
0.85	92.4	0.87	At1g75770	843910	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.85	92.4	0.88	At5g28340	832919	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	H.G.	S.X.
0.84	91.9	0.91	At1g50810	3767429	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.84	91.9	0.91	At5g07810	830674	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein	F:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVA	O.I.	H.G.	S.X.
0.81	90.4	0.89	At2g30580	817608	DRIP2 (DREB2A-INTERACTING PROTEIN 2)	Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	O.I.	H.G.	S.X.
0.79	89.1	0.88	At5g18620	831980	CHR17 (CHROMATIN REMODELING FACTOR17)	F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVA	O.I.	H.G.	S.X.
0.75	86.9	0.87	At2g46040	819212	ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein	F:DNA binding;P:biological_process unknown;C:intracellular;PMOF	O.I.	H.G.	S.X.
0.75	86.9	0.89	At4g32440	829379	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.75	86.9	0.90	At3g48440	824003	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	H.G.	S.X.
0.72	84.8	0.87	At1g70590	843396	F-box family protein	F:binding;P:biological_process unknown;C:chloroplast;BOFMPV	O.I.	H.G.	S.X.
0.69	82.9	0.88	At5g05130	830395	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	F:in 7 functions;P:unknown;C:unknown;MOBFPVA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.5 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.2 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.4 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.3 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.2 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.7 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.4 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.9 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.8 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.2 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.1 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.6 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.4 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.6 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.4 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.0 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.3 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.1 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.8 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.2 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.9 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.9 99.7 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
25.7 99.7 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
25.1 99.6 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
24.8 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.5 99.6 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.8 99.6 E-ATMX-35-raw-cel-1574334816
19.6 99.6 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.0 99.5 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.7 99.5 E-ATMX-35-raw-cel-1574334832
17.6 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.5 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.4 99.4 E-ATMX-35-raw-cel-1574334800
13.9 99.4 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
13.9 99.4 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.8 99.4 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.5 99.3 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.9 99.0 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
8.6 99.0 E-MEXP-509-raw-cel-829148561

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
55.5	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.2	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.4	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.3	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.2	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
47.7	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.4	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.9	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.8	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.2	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.1	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
40.6	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.4	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.6	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.4	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.0	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.3	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.1	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.8	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.2	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.9	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.9	99.7	GSM311289	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
25.7	99.7	GSM311290	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
25.1	99.6	GSM284387	Arabidopsis GSUS4b	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
24.8	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.5	99.6	GSM284386	Arabidopsis GSUS3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.8	99.6	E-ATMX-35-raw-cel-1574334816
19.6	99.6	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.0	99.5	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.7	99.5	E-ATMX-35-raw-cel-1574334832
17.6	99.5	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.5	99.5	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.4	99.4	E-ATMX-35-raw-cel-1574334800
13.9	99.4	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
13.9	99.4	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.8	99.4	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.5	99.3	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.9	99.0	GSM270870	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
8.6	99.0	E-MEXP-509-raw-cel-829148561

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.033 1 GO:0010342 The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization.
0.032 1 GO:0000719 The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines.
0.032 1 GO:0009650 Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.

SF	Genes	GO ID	Process Name
0.033	1	GO:0010342	The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization.
0.032	1	GO:0000719	The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines.
0.032	1	GO:0009650	Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.018 1 03420 Nucleotide excision repair

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.018	1	03420	Nucleotide excision repair

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	At5g23480
Gene name	DNA binding
Module size	59 genes
NF	0.88
%ile	98.2

Co-expression analysis

Gene ID At5g23480 Gene name DNA binding Module size 59 genes NF 0.88 %ile 98.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.018103420Nucleotide excision repair

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g23480

Gene name DNA binding

Module size 59 genes

NF 0.88

%ile 98.2

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.018 1 03420 Nucleotide excision repair

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays