Co-expression analysis

Gene ID At5g23030
Gene name TET12 (TETRASPANIN12)
Module size 42 genes
NF 0.61
%ile 82.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g23030832367TET12 (TETRASPANIN12)Member of TETRASPANIN familyO.I.H.G.S.X.
0.8391.40.85At1g18940838475nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BPOFMAO.I.H.G.S.X.
0.7788.00.85At4g30560829179ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.7385.50.79At1g11100837651SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-relatedF:in 6 functions;P:unknown;C:unknown;MBFOPVAO.I.H.G.S.X.
0.7184.20.79At4g32440829379agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.7184.20.79At1g70590843396F-box family proteinF:binding;P:biological_process unknown;C:chloroplast;BOFMPVO.I.H.G.S.X.
0.7083.50.78At2g21930816729F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.78At5g05130830395SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 7 functions;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.6882.20.79At4g02730828189transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAVO.I.H.G.S.X.
0.6882.20.78At2g30580817608DRIP2 (DREB2A-INTERACTING PROTEIN 2)Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.O.I.H.G.S.X.
0.6781.60.75At5g54280835516ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)Type VII myosin geneO.I.H.G.S.X.
0.6680.10.77At3g07020819887UDP-glucose:sterol glucosyltransferase (UGT80A2)F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOVO.I.H.G.S.X.
0.6680.10.75At3g48440824003zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.6579.60.78At2g25560817094DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.H.G.S.X.
0.6478.90.77At5g16630831525RAD4F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOPO.I.H.G.S.X.
0.6378.10.77At5g11080830975ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVBO.I.H.G.S.X.
0.6378.10.76At1g52920841725GPCR (G PROTEIN COUPLED RECEPTOR)Encodes a plasma membrane–localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.O.I.H.G.S.X.
0.6277.30.75At1g35530840448DEAD/DEAH box helicase, putativeF:in 6 functions;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.6176.70.77At5g07810830674SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinF:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVAO.I.H.G.S.X.
0.6176.70.77At5g28340832919pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.H.G.S.X.
0.6176.70.78At5g25380832610CYCA2core cell cycle genesO.I.H.G.S.X.
0.6075.70.76At2g06040815159-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.6075.70.75At1g75770843910unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6075.70.77At1g77250844061PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFOO.I.H.G.S.X.
0.5974.70.78At3g51690824332-DNA helicase homolog PIF1.O.I.H.G.S.X.
0.5974.70.77At4g31420829269zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MFOPO.I.H.G.S.X.
0.5974.70.77At1g08600837382ATRXF:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.5873.80.75At1g48310841251CHR18F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.5873.80.76At5g09800830840U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFO.I.H.G.S.X.
0.5773.80.76At5g05510830434protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.5773.80.78At5g49900835053catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOAO.I.H.G.S.X.
0.5773.80.76At5g42010834206WD-40 repeat family proteinF:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPAO.I.H.G.S.X.
0.5773.80.83At5g01280831711-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPAO.I.H.G.S.X.
0.5773.80.77At1g77410844078BGAL16 (beta-galactosidase 16)F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOAO.I.H.G.S.X.
0.5773.80.75At3g49450824107F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.76At3g01015821318-F:unknown;P:unknown;C:unknown;PMOFO.I.H.G.S.X.
0.5368.60.75At5g58190835931ECT10F:unknown;P:unknown;C:unknown;MPFOO.I.H.G.S.X.
0.5368.60.76At4g20500827798transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.76At1g12370837792PHR1 (PHOTOLYASE 1)encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an alleleO.I.H.G.S.X.
0.5065.30.77At3g58800825049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PVOO.I.H.G.S.X.
0.4862.50.78At1g12640837820membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFPO.I.H.G.S.X.
0.3948.40.75At5g64930836617CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.799.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.599.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.099.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.099.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.599.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.799.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.699.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.599.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.499.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.599.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.299.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.199.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.199.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.999.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.699.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.299.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.899.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.499.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.899.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
20.799.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.199.6GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
18.399.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.399.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.399.5GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
14.699.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.799.3GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
12.699.3GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
10.999.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
9.999.1GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.799.1E-MEXP-509-raw-cel-829148561
9.499.1GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0451GO:0009868The series of molecular signals mediated by jasmonic acid involved in jasmonic acid/ethylene (ethene) dependent systemic resistance.Link to AmiGO
0.0441GO:0000719The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines.Link to AmiGO
0.0441GO:0009650Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.022103420Nucleotide excision repairLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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