CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g22000

Gene name RHF2A (RING-H2 GROUP F2A)

Module size 10 genes

NF 0.70

%ile 88.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.69 82.9 1.00 At5g22000 832260 RHF2A (RING-H2 GROUP F2A) encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. O.I. H.G. S.X.
0.89 94.6 0.92 At4g00720 828023 ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA O.I. H.G. S.X.
0.82 90.9 0.92 At5g06560 830544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.74 86.1 0.91 At1g33250 840219 fringe-related protein F:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFO O.I. H.G. S.X.
0.72 84.8 0.91 At5g23670 832432 LCB2 Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. O.I. H.G. S.X.
0.70 83.5 0.90 At1g71410 843482 protein kinase family protein F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVA O.I. H.G. S.X.
0.70 83.5 0.93 At1g15880 838158 GOS11 (golgi snare 11) Golgi SNARE 11 protein (GOS11) O.I. H.G. S.X.
0.64 78.9 0.93 At5g32440 833203 - F:unknown;P:unknown;C:chloroplast;OPMFB O.I. H.G. S.X.
0.62 77.3 0.91 At1g06890 837199 transporter-related F:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBA O.I. H.G. S.X.
0.56 73.0 0.92 At2g43790 818982 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.69	82.9	1.00	At5g22000	832260	RHF2A (RING-H2 GROUP F2A)	encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.	O.I.	H.G.	S.X.
0.89	94.6	0.92	At4g00720	828023	ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA	O.I.	H.G.	S.X.
0.82	90.9	0.92	At5g06560	830544	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA	O.I.	H.G.	S.X.
0.74	86.1	0.91	At1g33250	840219	fringe-related protein	F:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFO	O.I.	H.G.	S.X.
0.72	84.8	0.91	At5g23670	832432	LCB2	Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.	O.I.	H.G.	S.X.
0.70	83.5	0.90	At1g71410	843482	protein kinase family protein	F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVA	O.I.	H.G.	S.X.
0.70	83.5	0.93	At1g15880	838158	GOS11 (golgi snare 11)	Golgi SNARE 11 protein (GOS11)	O.I.	H.G.	S.X.
0.64	78.9	0.93	At5g32440	833203	-	F:unknown;P:unknown;C:chloroplast;OPMFB	O.I.	H.G.	S.X.
0.62	77.3	0.91	At1g06890	837199	transporter-related	F:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBA	O.I.	H.G.	S.X.
0.56	73.0	0.92	At2g43790	818982	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.6 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.7 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.7 99.7 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
28.8 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.5 99.7 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
26.3 99.7 GSM106914 opr3_JA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
24.5 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.4 99.6 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.8 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.9 99.6 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
22.9 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1 99.6 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.4 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.6 99.6 GSM106915 opr3_JA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
20.2 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.0 99.5 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.0 99.5 GSM106911 opr2_JA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
16.6 99.5 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
16.6 99.5 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.3 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.0 99.5 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.9 99.5 GSM106917 opr3_JA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
15.5 99.5 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
15.4 99.5 E-MEXP-509-raw-cel-829148561
14.9 99.4 GSM106910 opr3_JA_2 hrs_rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.4 99.4 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.3 99.4 GSM106909 opr3-JA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.3 99.4 E-MEXP-509-raw-cel-829148597
13.8 99.4 GSM106973 ws_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.8 99.4 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
13.4 99.4 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.9 99.3 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.5 99.3 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.4 99.3 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
12.2 99.3 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.1 99.3 GSM179970 Arabidopsis aux1 mutant roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.7 99.3 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
11.5 99.3 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.4 99.3 GSM179967 Arabidopsis aux1 mutant roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.2 99.2 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.9 99.2 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.2 99.2 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.1 99.2 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.1 99.2 GSM131276 AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
10.0 99.2 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.0 99.2 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.5 99.1 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.4 99.1 GSM131275 AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
9.1 99.1 GSM131273 AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
8.9 99.0 GSM131274 AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
8.9 99.0 GSM179961 Arabidopsis roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
8.8 99.0 GSM179959 Arabidopsis roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
8.6 99.0 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
8.6 99.0 GSM131278 AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
8.6 99.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
45.1	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.6	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.7	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.7	99.7	GSM106913	opr3_JA_8 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
28.8	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.5	99.7	GSM106912	opr3_JA 8hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
26.3	99.7	GSM106914	opr3_JA_8 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
24.5	99.6	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.4	99.6	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.8	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.9	99.6	GSM142631	MC002_ATH1_A3.3-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
22.9	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1	99.6	GSM142625	MC002_ATH1_A1.3-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.4	99.6	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.6	99.6	GSM106915	opr3_JA_22 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
20.2	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.0	99.5	GSM142623	MC002_ATH1_A1.1-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.0	99.5	GSM106911	opr2_JA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
16.6	99.5	GSM131608	ATGE_42_D	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
16.6	99.5	GSM142636	MC002_ATH1_A5.2-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.3	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.0	99.5	GSM131588	ATGE_35_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.9	99.5	GSM106917	opr3_JA_22 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
15.5	99.5	GSM142630	MC002_ATH1_A3.2-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
15.4	99.5	E-MEXP-509-raw-cel-829148561
14.9	99.4	GSM106910	opr3_JA_2 hrs_rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.4	99.4	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.3	99.4	GSM106909	opr3-JA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.3	99.4	E-MEXP-509-raw-cel-829148597
13.8	99.4	GSM106973	ws_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.8	99.4	GSM131606	ATGE_42_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
13.4	99.4	GSM131589	ATGE_35_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.9	99.3	GSM131607	ATGE_42_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.5	99.3	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
12.4	99.3	GSM131277	AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
12.2	99.3	GSM142629	MC002_ATH1_A3.1-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.1	99.3	GSM179970	Arabidopsis aux1 mutant roots, ethylene treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.7	99.3	GSM131590	ATGE_35_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
11.5	99.3	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.4	99.3	GSM179967	Arabidopsis aux1 mutant roots, air treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.2	99.2	GSM291119	root - 21% oxygen - 48h - A	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.9	99.2	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.2	99.2	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.1	99.2	GSM131593	ATGE_36_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
10.1	99.2	GSM131276	AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
10.0	99.2	GSM106916	opr3_JA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.0	99.2	GSM131591	ATGE_36_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.5	99.1	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.4	99.1	GSM131275	AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
9.1	99.1	GSM131273	AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
8.9	99.0	GSM131274	AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
8.9	99.0	GSM179961	Arabidopsis roots, ethylene treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
8.8	99.0	GSM179959	Arabidopsis roots, air treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
8.6	99.0	GSM131592	ATGE_36_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
8.6	99.0	GSM131278	AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
8.6	99.0	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0046512 The chemical reactions and pathways resulting in the formation of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues.
0.167 1 GO:0080136 The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress.
0.154 1 GO:0051603 The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.

SF	Genes	GO ID	Process Name
0.182	1	GO:0046512	The chemical reactions and pathways resulting in the formation of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues.
0.167	1	GO:0080136	The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress.
0.154	1	GO:0051603	The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.100 1 00600 Sphingolipid metabolism
0.077 1 04650 Natural killer cell mediated cytotoxicity
0.034 1 04130 SNARE interactions in vesicular transport

SF	Genes	KEGG ID	Pathway name
0.100	1	00600	Sphingolipid metabolism
0.077	1	04650	Natural killer cell mediated cytotoxicity
0.034	1	04130	SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g22000
Gene name	RHF2A (RING-H2 GROUP F2A)
Module size	10 genes
NF	0.70
%ile	88.6

Co-expression analysis

Gene ID At5g22000 Gene name RHF2A (RING-H2 GROUP F2A) Module size 10 genes NF 0.70 %ile 88.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.100100600Sphingolipid metabolism0.077104650Natural killer cell mediated cytotoxicity0.034104130SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g22000

Gene name RHF2A (RING-H2 GROUP F2A)

Module size 10 genes

NF 0.70

%ile 88.6

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.100 1 00600 Sphingolipid metabolism
0.077 1 04650 Natural killer cell mediated cytotoxicity
0.034 1 04130 SNARE interactions in vesicular transport

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays