CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g19800

Gene name hydroxyproline-rich glycoprotein family protein

Module size 6 genes

NF 0.90

%ile 98.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.67 81.6 1.00 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA O.I. H.G. S.X.
1.00 100.0 0.88 At2g20520 816574 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) fasciclin-like arabinogalactan-protein 6 (Fla6) O.I. H.G. S.X.
1.00 100.0 0.88 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. H.G. S.X.
1.00 100.0 0.88 At5g57540 835858 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. H.G. S.X.
0.91 95.6 0.87 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. O.I. H.G. S.X.
0.91 95.6 0.89 At5g57530 835857 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBO O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.67	81.6	1.00	At5g19800	832100	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA	O.I.	H.G.	S.X.
1.00	100.0	0.88	At2g20520	816574	FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)	fasciclin-like arabinogalactan-protein 6 (Fla6)	O.I.	H.G.	S.X.
1.00	100.0	0.88	At5g22410	832302	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	H.G.	S.X.
1.00	100.0	0.88	At5g57540	835858	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	H.G.	S.X.
0.91	95.6	0.87	At1g54970	841938	ATPRP1 (PROLINE-RICH PROTEIN 1)	encodes a proline-rich protein that is specifically expressed in the root.	O.I.	H.G.	S.X.
0.91	95.6	0.89	At5g57530	835857	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBO	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
340.3 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
99.3 99.9 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
46.4 99.8 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
35.0 99.7 E-MEXP-849-raw-cel-1181980998
33.5 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.3 99.7 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
28.2 99.7 E-MEXP-828-raw-cel-1156922634
25.5 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.8 99.6 E-MEXP-828-raw-cel-1156922659
23.8 99.6 E-MEXP-828-raw-cel-1156922684
23.6 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
23.3 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.7 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.7 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.4 99.6 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
22.3 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.2 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.9 99.6 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
21.7 99.6 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
21.1 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.4 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.2 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.8 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.2 99.5 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.2 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.8 99.5 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.7 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4 99.5 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.4 99.5 E-MEXP-1797-raw-cel-1669767958
16.8 99.5 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.8 99.5 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
16.5 99.5 E-ATMX-31-raw-cel-1516947882
16.3 99.5 E-MEXP-1797-raw-cel-1669768048
15.9 99.5 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.7 99.5 E-MEXP-828-raw-cel-1156922438
15.7 99.5 E-MEXP-1797-raw-cel-1669767976
15.6 99.5 E-ATMX-31-raw-cel-1516947899
15.5 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.3 99.4 E-MEXP-849-raw-cel-1181980990
15.0 99.4 E-MEXP-1797-raw-cel-1669767967
15.0 99.4 E-MEXP-1797-raw-cel-1669767994
14.3 99.4 E-MEXP-1797-raw-cel-1669767940
13.6 99.4 E-ATMX-31-raw-cel-1516947916
13.3 99.4 E-MEXP-1797-raw-cel-1669768012
13.1 99.4 E-MEXP-1797-raw-cel-1669768066
12.8 99.3 E-MEXP-1797-raw-cel-1669768030
12.4 99.3 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
12.3 99.3 E-MEXP-828-raw-cel-1156922485
12.1 99.3 E-MEXP-1797-raw-cel-1669768084
12.1 99.3 E-MEXP-1797-raw-cel-1669767949
12.1 99.3 E-MEXP-1797-raw-cel-1669768075
12.0 99.3 E-MEXP-828-raw-cel-1156922467
12.0 99.3 E-MEXP-1797-raw-cel-1669768021
12.0 99.3 E-MEXP-1797-raw-cel-1669768003
11.9 99.3 E-MEXP-1797-raw-cel-1669768057
11.5 99.3 E-MEXP-828-raw-cel-1156922416
11.5 99.3 E-MEXP-1797-raw-cel-1669767985
11.5 99.3 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
11.3 99.3 GSM133813 Diamond_A-2-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
10.8 99.2 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
10.5 99.2 E-MEXP-849-raw-cel-1181980982
10.4 99.2 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
10.3 99.2 E-MEXP-828-raw-cel-1156922968
10.3 99.2 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.1 99.2 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.1 99.2 GSM133814 Diamond_A-3-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
10.1 99.2 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.9 99.1 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.9 99.1 E-MEXP-828-raw-cel-1156922872
9.8 99.1 E-MEXP-1797-raw-cel-1669768039
9.8 99.1 E-MEXP-828-raw-cel-1156922987
9.7 99.1 GSM133811 Diamond_A-4-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.6 99.1 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.6 99.1 GSM133815 Diamond_A-4-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.6 99.1 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
9.5 99.1 E-MEXP-828-raw-cel-1156922509
9.5 99.1 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.5 99.1 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.4 99.1 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
9.4 99.1 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
9.2 99.1 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
8.7 99.0 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.6 99.0 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
340.3	100.0	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
99.3	99.9	GSM133119	RIKEN-YAMAUCHI2A	GSE5687	AtGenExpress: Different temperature treatment of seeds
46.4	99.8	GSM226541	L11SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
35.0	99.7	E-MEXP-849-raw-cel-1181980998
33.5	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.3	99.7	GSM131608	ATGE_42_D	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
28.2	99.7	E-MEXP-828-raw-cel-1156922634
25.5	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.8	99.6	E-MEXP-828-raw-cel-1156922659
23.8	99.6	E-MEXP-828-raw-cel-1156922684
23.6	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
23.3	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.7	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.7	99.6	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.4	99.6	GSM226554	Slice12JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
22.3	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.2	99.6	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.9	99.6	GSM131606	ATGE_42_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
21.7	99.6	GSM133120	RIKEN-YAMAUCHI2B	GSE5687	AtGenExpress: Different temperature treatment of seeds
21.1	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.4	99.6	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.2	99.6	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.8	99.5	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.2	99.5	GSM131607	ATGE_42_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
18.2	99.5	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.8	99.5	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.7	99.5	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4	99.5	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.4	99.5	E-MEXP-1797-raw-cel-1669767958
16.8	99.5	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.8	99.5	GSM142904	WW002_ATH1_A1-willa-CON-REP2	GSE6181	Assembly of the cell wall pectic matrix.
16.5	99.5	E-ATMX-31-raw-cel-1516947882
16.3	99.5	E-MEXP-1797-raw-cel-1669768048
15.9	99.5	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.7	99.5	E-MEXP-828-raw-cel-1156922438
15.7	99.5	E-MEXP-1797-raw-cel-1669767976
15.6	99.5	E-ATMX-31-raw-cel-1516947899
15.5	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.3	99.4	E-MEXP-849-raw-cel-1181980990
15.0	99.4	E-MEXP-1797-raw-cel-1669767967
15.0	99.4	E-MEXP-1797-raw-cel-1669767994
14.3	99.4	E-MEXP-1797-raw-cel-1669767940
13.6	99.4	E-ATMX-31-raw-cel-1516947916
13.3	99.4	E-MEXP-1797-raw-cel-1669768012
13.1	99.4	E-MEXP-1797-raw-cel-1669768066
12.8	99.3	E-MEXP-1797-raw-cel-1669768030
12.4	99.3	GSM184845	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
12.3	99.3	E-MEXP-828-raw-cel-1156922485
12.1	99.3	E-MEXP-1797-raw-cel-1669768084
12.1	99.3	E-MEXP-1797-raw-cel-1669767949
12.1	99.3	E-MEXP-1797-raw-cel-1669768075
12.0	99.3	E-MEXP-828-raw-cel-1156922467
12.0	99.3	E-MEXP-1797-raw-cel-1669768021
12.0	99.3	E-MEXP-1797-raw-cel-1669768003
11.9	99.3	E-MEXP-1797-raw-cel-1669768057
11.5	99.3	E-MEXP-828-raw-cel-1156922416
11.5	99.3	E-MEXP-1797-raw-cel-1669767985
11.5	99.3	GSM134208	Murray_3-4_D7-GROWTH_Rep1_ATH1	GSE5750	Growth of suspension-cultured cells
11.3	99.3	GSM133813	Diamond_A-2-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
10.8	99.2	GSM134204	Murray_3-2_D3-GROWTH_Rep1_ATH1	GSE5750	Growth of suspension-cultured cells
10.5	99.2	E-MEXP-849-raw-cel-1181980982
10.4	99.2	GSM142902	WW001_ATH1_A1-WILLA-CON	GSE6181	Assembly of the cell wall pectic matrix.
10.3	99.2	E-MEXP-828-raw-cel-1156922968
10.3	99.2	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.1	99.2	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.1	99.2	GSM133814	Diamond_A-3-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
10.1	99.2	GSM133809	Diamond_A-2-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.9	99.1	GSM133810	Diamond_A-3-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.9	99.1	E-MEXP-828-raw-cel-1156922872
9.8	99.1	E-MEXP-1797-raw-cel-1669768039
9.8	99.1	E-MEXP-828-raw-cel-1156922987
9.7	99.1	GSM133811	Diamond_A-4-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.6	99.1	GSM133966	Fukuda_1-11_10A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.6	99.1	GSM133815	Diamond_A-4-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.6	99.1	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
9.5	99.1	E-MEXP-828-raw-cel-1156922509
9.5	99.1	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.5	99.1	GSM133808	Diamond_A-1-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.4	99.1	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
9.4	99.1	GSM75509	Col-0 2h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
9.2	99.1	GSM75521	slr-1 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
8.7	99.0	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.6	99.0	GSM133950	Murray_2-6_T10-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.143 2 GO:0006073 The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.143	2	GO:0006073	The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.023 1 00360 Phenylalanine metabolism
0.023 1 00680 Methane metabolism
0.019 1 00940 Phenylpropanoid biosynthesis

SF	Genes	KEGG ID	Pathway name
0.023	1	00360	Phenylalanine metabolism
0.023	1	00680	Methane metabolism
0.019	1	00940	Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	At5g19800
Gene name	hydroxyproline-rich glycoprotein family protein
Module size	6 genes
NF	0.90
%ile	98.8

Co-expression analysis

Gene ID At5g19800 Gene name hydroxyproline-rich glycoprotein family protein Module size 6 genes NF 0.90 %ile 98.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.1432GO:0006073The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.023100360Phenylalanine metabolism0.023100680Methane metabolism0.019100940Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g19800

Gene name hydroxyproline-rich glycoprotein family protein

Module size 6 genes

NF 0.90

%ile 98.8

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.143 2 GO:0006073 The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.

SF Genes KEGG ID Pathway name Link to KEGG
0.023 1 00360 Phenylalanine metabolism
0.023 1 00680 Methane metabolism
0.019 1 00940 Phenylpropanoid biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays