Co-expression analysis

Gene ID At5g19500
Gene name tryptophan/tyrosine permease family protein
Module size 67 genes
NF 0.23
%ile 24.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9296.01.00At5g19500832070tryptophan/tyrosine permease family proteinF:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMFO.I.H.G.S.X.
0.5673.00.86At3g56160824782bile acid:sodium symporterF:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFAO.I.H.G.S.X.
0.5267.40.87At1g06240837134unknown proteinF:unknown;P:biological_process unknown;C:unknown;BOPFMO.I.H.G.S.X.
0.5065.30.87At4g05090825853inositol monophosphatase family proteinF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:chloroplast;BOFPMAO.I.H.G.S.X.
0.4457.20.85At3g21580821712cobalt ion transmembrane transporterF:cobalt ion transmembrane transporter activity;P:cobalt ion transport, cobalamin biosynthetic process;C:chloroplast;BOPAO.I.H.G.S.X.
0.4253.90.84At5g06790830569unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.4050.80.84At1g29530839830unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBAO.I.H.G.S.X.
0.4050.80.85At1g49010841324myb family transcription factorF:transcription factor activity, DNA binding;P:in 6 processes;C:unknown;PMOFBVO.I.H.G.S.X.
0.3846.70.85At3g26630822275pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMO.I.H.G.S.X.
0.3745.00.85At3g22104821773phototropic-responsive NPH3 protein-relatedF:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMOBFO.I.H.G.S.X.
0.3745.00.83At5g47900834841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOMPO.I.H.G.S.X.
0.3745.00.84At5g40060834003ATP binding / nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:apoptosis;C:unknownO.I.H.G.S.X.
0.3439.80.85At5g24000832465unknown proteinF:unknown;P:unknown;C:chloroplast;BOPAO.I.H.G.S.X.
0.3439.80.83At5g16810831544ATP binding / protein kinaseF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PFOO.I.H.G.S.X.
0.3338.10.86At1g71810843511ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAVO.I.H.G.S.X.
0.3338.10.86At2g35155818082catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.3338.10.86At2g38330818413MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPAFMO.I.H.G.S.X.
0.3235.70.86At4g19070827645cadmium-responsive protein / cadmium induced protein (AS8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VPOMBAO.I.H.G.S.X.
0.3235.70.86At2g26930817234ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase.O.I.H.G.S.X.
0.3032.10.84At1g78180844154bindingF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.H.G.S.X.
0.3032.10.83At5g10620830927-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOAPO.I.H.G.S.X.
0.2930.30.84At5g55380835631membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.H.G.S.X.
0.2830.30.84At5g12150831088pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing proteinEncodes a protein with similarity to REN1, a Rho GTPase activating protein.O.I.H.G.S.X.
0.2830.30.84At1g12020837754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.2830.30.83At5g09320830791VPS9BF:molecular_function unknown;P:transport;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2522.60.85At5g12130831086PDE149 (PIGMENT DEFECTIVE 149)F:unknown;P:thylakoid membrane organization;C:chloroplast thylakoid membrane, integral to membrane;BOPAMO.I.H.G.S.X.
0.2522.60.84At5g03910830269ATATH12member of ATH subfamilyO.I.H.G.S.X.
0.2522.60.84At5g57030835806LUT2 (LUTEIN DEFICIENT 2)Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclaseO.I.H.G.S.X.
0.2420.70.83At1g72640843596binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast;BPOMAO.I.H.G.S.X.
0.2420.70.83At1g23360838945UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;BOAFMPO.I.H.G.S.X.
0.2420.70.85At1g54350841876ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPVO.I.H.G.S.X.
0.2420.70.84At5g48830834941unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.H.G.S.X.
0.2420.70.83At4g21190827867emb1417 (embryo defective 1417)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POMBO.I.H.G.S.X.
0.2319.30.83At5g52030835278TraB protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAPO.I.H.G.S.X.
0.2319.30.84At3g04870819647ZDS (ZETA-CAROTENE DESATURASE)Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.O.I.H.G.S.X.
0.2319.30.84At1g05030839340hexose transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:mitochondrion, integral to membrane, membrane;BMFOPAO.I.H.G.S.X.
0.2217.50.84At1g64150842719unknown proteinF:unknown;P:unknown;C:chloroplast, membrane;BOMFPAO.I.H.G.S.X.
0.2217.50.85At5g38360833818catalyticF:catalytic activity;P:biological_process unknown;C:unknown;BOPMFAO.I.H.G.S.X.
0.2115.80.85At3g24030821988hydroxyethylthiazole kinase family proteinF:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPMO.I.H.G.S.X.
0.2115.80.84At1g06820837193CRTISO (CAROTENOID ISOMERASE)Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.O.I.H.G.S.X.
0.2014.40.85At1g26090839150unknown proteinF:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFPO.I.H.G.S.X.
0.1912.70.84At3g55080824674SET domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.1912.70.83At3g60620825233phosphatidate cytidylyltransferase family proteinF:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFPO.I.H.G.S.X.
0.1912.70.84At3g58010824970unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFOO.I.H.G.S.X.
0.1811.40.87At1g78010844136tRNA modification GTPase, putativeF:GTP binding, GTPase activity;P:small GTPase mediated signal transduction, tRNA modification;C:intracellular;BOMAFPO.I.H.G.S.X.
0.1811.40.83At3g59870825157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.1811.40.84At2g15290816018TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma.O.I.H.G.S.X.
0.1710.20.87At1g74530843794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.1710.20.90At1g67840843110CSK (CHLOROPLAST SENSOR KINASE)Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.O.I.H.G.S.X.
0.1710.20.84At1g80030844343DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVO.I.H.G.S.X.
0.1710.20.84At3g52155824380-F:unknown;P:unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.168.80.86At2g31400817698pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.168.80.84At1g53120841746RNA-binding S4 domain-containing proteinF:RNA binding;P:biological_process unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.168.80.84At5g62840836405phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast;PBOFO.I.H.G.S.X.
0.157.80.84At5g06430830531thioredoxin-relatedF:unknown;P:unknown;C:unknown;BPOO.I.H.G.S.X.
0.146.80.83At1g31800840067CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)Encodes a protein with β-ring carotenoid hydroxylase activity.O.I.H.G.S.X.
0.146.80.84At3g05350819699aminopeptidase/ hydrolaseF:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAPO.I.H.G.S.X.
0.146.80.84At1g32160840108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.146.80.84At2g35490818114plastid-lipid associated protein PAP, putativeF:structural molecule activity;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOMO.I.H.G.S.X.
0.124.90.84At3g01810821073-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFBPAO.I.H.G.S.X.
0.114.10.83At5g55710835665-F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPO.I.H.G.S.X.
0.114.10.83At3g56010824767unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;PO.I.H.G.S.X.
0.103.40.87At4g38670830023pathogenesis-related thaumatin family proteinF:unknown;P:response to other organism;C:unknown;PMFBOVO.I.H.G.S.X.
0.103.40.84At1g08840837406emb2411 (embryo defective 2411)F:ATP-dependent DNA helicase activity, DNA binding, ATP binding;P:embryonic development ending in seed dormancy, DNA replication;C:chloroplast;MBOFPAVO.I.H.G.S.X.
0.092.80.83At2g20890816623PSB29Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane–delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.O.I.H.G.S.X.
0.071.90.86At4g37130829867hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBVAO.I.H.G.S.X.
0.071.90.84At3g20070821546TTN9 (TITAN9)Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.299.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.799.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.699.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
49.399.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.799.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.199.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.999.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.599.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.399.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
44.699.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.899.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.499.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.199.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.499.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.799.7GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
26.599.7GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
26.499.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
25.799.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.599.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.699.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.199.5GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.199.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.299.4GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
14.199.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.299.4GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.699.3GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.899.1GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.599.1GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.399.1GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.699.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0753GO:0016117The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.Link to AmiGO
0.0552GO:0016120The chemical reactions and pathways resulting in the formation of carotenes, hydrocarbon carotenoids.Link to AmiGO
0.0552GO:0016123The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.067300906Carotenoid biosynthesisLink to KEGG PATHWAY
0.027100730Thiamine metabolismLink to KEGG PATHWAY
0.023301062Biosynthesis of terpenoids and steroidsLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage