CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g18690

Gene name AGP25 (ARABINOGALACTAN PROTEINS 25)

Module size 8 genes

NF 0.72

%ile 90.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At5g18690 831987 AGP25 (ARABINOGALACTAN PROTEINS 25) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB O.I. H.G. S.X.
0.78 88.6 0.78 At2g44690 819077 ARAC9 A member of ROP GTPase gene family. O.I. H.G. S.X.
0.75 86.9 0.78 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. H.G. S.X.
0.73 85.5 0.80 At1g07880 837303 ATMPK13 member of MAP Kinase O.I. H.G. S.X.
0.71 84.2 0.83 At1g45180 841086 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. H.G. S.X.
0.61 76.7 0.78 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. H.G. S.X.
0.61 76.7 0.81 At2g44830 819092 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA O.I. H.G. S.X.
0.53 68.6 0.84 At3g53540 824522 unknown protein F:unknown;P:unknown;C:plasma membrane;OMBFPAV O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At5g18690	831987	AGP25 (ARABINOGALACTAN PROTEINS 25)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB	O.I.	H.G.	S.X.
0.78	88.6	0.78	At2g44690	819077	ARAC9	A member of ROP GTPase gene family.	O.I.	H.G.	S.X.
0.75	86.9	0.78	At2g44450	819052	BGLU15 (BETA GLUCOSIDASE 15)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA	O.I.	H.G.	S.X.
0.73	85.5	0.80	At1g07880	837303	ATMPK13	member of MAP Kinase	O.I.	H.G.	S.X.
0.71	84.2	0.83	At1g45180	841086	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	H.G.	S.X.
0.61	76.7	0.78	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	H.G.	S.X.
0.61	76.7	0.81	At2g44830	819092	protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA	O.I.	H.G.	S.X.
0.53	68.6	0.84	At3g53540	824522	unknown protein	F:unknown;P:unknown;C:plasma membrane;OMBFPAV	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.5 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.3 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.6 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
59.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
58.6 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.0 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.7 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.0 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.3 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.0 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.0 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.3 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.6 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.0 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.1 99.7 E-MEXP-828-raw-cel-1156922416
27.5 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.7 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
24.7 99.6 E-MEXP-828-raw-cel-1156922905
24.4 99.6 E-MEXP-828-raw-cel-1156922923
21.8 99.6 E-MEXP-828-raw-cel-1156922572
19.6 99.6 E-MEXP-1138-raw-cel-1432772842
19.3 99.6 E-MEXP-1138-raw-cel-1432773098
18.9 99.5 E-MEXP-1138-raw-cel-1432772970
18.7 99.5 E-MEXP-1138-raw-cel-1432773034
18.6 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.5 99.5 E-MEXP-828-raw-cel-1156922386
18.3 99.5 E-MEXP-1138-raw-cel-1432772906
17.8 99.5 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
17.8 99.5 E-MEXP-828-raw-cel-1156922342
17.2 99.5 E-MEXP-1138-raw-cel-1432773002
17.1 99.5 E-MEXP-1138-raw-cel-1432773130
17.1 99.5 E-MEXP-828-raw-cel-1156922944
16.9 99.5 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
16.5 99.5 E-MEXP-1138-raw-cel-1432772522
15.8 99.5 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
15.6 99.5 E-MEXP-828-raw-cel-1156922368
15.6 99.5 E-MEXP-1138-raw-cel-1432772682
15.5 99.5 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.4 99.5 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.3 99.4 E-MEXP-1138-raw-cel-1432772810
15.1 99.4 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
15.0 99.4 E-MEXP-1138-raw-cel-1432773066
14.6 99.4 E-MEXP-1138-raw-cel-1432772554
14.5 99.4 GSM142724 CH001_ATH1_A003-Hampt-c4a_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.4 99.4 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.1 99.4 E-MEXP-1138-raw-cel-1432772586
14.0 99.4 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.0 99.4 E-MEXP-1138-raw-cel-1432772938
14.0 99.4 E-MEXP-828-raw-cel-1156922684
13.9 99.4 E-MEXP-1138-raw-cel-1432772618
13.7 99.4 E-MEXP-828-raw-cel-1156922467
13.6 99.4 E-MEXP-1138-raw-cel-1432772874
13.6 99.4 E-MEXP-1138-raw-cel-1432772650
13.5 99.4 E-MEXP-285-raw-cel-440782791
13.4 99.4 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
13.1 99.4 E-MEXP-1138-raw-cel-1432773226
13.0 99.4 E-MEXP-1138-raw-cel-1432772714
12.9 99.3 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
12.7 99.3 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
12.6 99.3 GSM131645 ATGE_2_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
12.6 99.3 E-MEXP-828-raw-cel-1156922318
12.4 99.3 GSM142723 CH001_ATH1_A002-Hampt-aka GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
12.3 99.3 E-MEXP-1138-raw-cel-1432772778
12.0 99.3 E-MEXP-1138-raw-cel-1432772746
11.9 99.3 E-MEXP-1138-raw-cel-1432773162
11.9 99.3 E-MEXP-1138-raw-cel-1432773386
11.7 99.3 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.7 99.3 GSM133894 Schroeder_1-12_JS44-starve-96h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
11.6 99.3 E-MEXP-285-raw-cel-440782725
11.2 99.2 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
11.2 99.2 GSM142725 CH001_ATH1_A004-Hampt-c1a GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
11.1 99.2 GSM142730 CH001_ATH1_A009-Hampt-wsc_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
11.1 99.2 GSM131644 ATGE_2_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
11.0 99.2 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.0 99.2 E-MEXP-1138-raw-cel-1432773194
10.6 99.2 E-MEXP-1138-raw-cel-1432773354
10.6 99.2 GSM142632 MC002_ATH1_A4.1-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.2 99.2 E-MEXP-1138-raw-cel-1432773290
10.1 99.2 GSM131643 ATGE_2_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.8 99.1 GSM133892 Schroeder_1-6_JS43-control-96h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
9.7 99.1 E-MEXP-1138-raw-cel-1432773258
9.7 99.1 GSM142728 CH001_ATH1_A007-Hampt-c4b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
9.7 99.1 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
9.4 99.1 E-MEXP-828-raw-cel-1156922533
9.3 99.1 E-MEXP-1138-raw-cel-1432773322
8.9 99.0 GSM157325 Hammond_3-18_Caesium-treated-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
8.9 99.0 GSM142726 CH001_ATH1_A005-Hampt-wsb_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
8.7 99.0 E-MEXP-828-raw-cel-1156922829
8.6 99.0 E-MEXP-265-raw-cel-414617890

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
70.3	99.9	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.0	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.9	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.7	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.5	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.3	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.6	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
59.0	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
58.6	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.0	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.7	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.0	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.3	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.0	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.0	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.3	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.6	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.0	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.1	99.7	E-MEXP-828-raw-cel-1156922416
27.5	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.7	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
24.7	99.6	E-MEXP-828-raw-cel-1156922905
24.4	99.6	E-MEXP-828-raw-cel-1156922923
21.8	99.6	E-MEXP-828-raw-cel-1156922572
19.6	99.6	E-MEXP-1138-raw-cel-1432772842
19.3	99.6	E-MEXP-1138-raw-cel-1432773098
18.9	99.5	E-MEXP-1138-raw-cel-1432772970
18.7	99.5	E-MEXP-1138-raw-cel-1432773034
18.6	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.5	99.5	E-MEXP-828-raw-cel-1156922386
18.3	99.5	E-MEXP-1138-raw-cel-1432772906
17.8	99.5	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
17.8	99.5	E-MEXP-828-raw-cel-1156922342
17.2	99.5	E-MEXP-1138-raw-cel-1432773002
17.1	99.5	E-MEXP-1138-raw-cel-1432773130
17.1	99.5	E-MEXP-828-raw-cel-1156922944
16.9	99.5	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
16.5	99.5	E-MEXP-1138-raw-cel-1432772522
15.8	99.5	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
15.6	99.5	E-MEXP-828-raw-cel-1156922368
15.6	99.5	E-MEXP-1138-raw-cel-1432772682
15.5	99.5	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.4	99.5	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.3	99.4	E-MEXP-1138-raw-cel-1432772810
15.1	99.4	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
15.0	99.4	E-MEXP-1138-raw-cel-1432773066
14.6	99.4	E-MEXP-1138-raw-cel-1432772554
14.5	99.4	GSM142724	CH001_ATH1_A003-Hampt-c4a_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.4	99.4	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.1	99.4	E-MEXP-1138-raw-cel-1432772586
14.0	99.4	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.0	99.4	E-MEXP-1138-raw-cel-1432772938
14.0	99.4	E-MEXP-828-raw-cel-1156922684
13.9	99.4	E-MEXP-1138-raw-cel-1432772618
13.7	99.4	E-MEXP-828-raw-cel-1156922467
13.6	99.4	E-MEXP-1138-raw-cel-1432772874
13.6	99.4	E-MEXP-1138-raw-cel-1432772650
13.5	99.4	E-MEXP-285-raw-cel-440782791
13.4	99.4	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
13.1	99.4	E-MEXP-1138-raw-cel-1432773226
13.0	99.4	E-MEXP-1138-raw-cel-1432772714
12.9	99.3	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
12.7	99.3	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
12.6	99.3	GSM131645	ATGE_2_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
12.6	99.3	E-MEXP-828-raw-cel-1156922318
12.4	99.3	GSM142723	CH001_ATH1_A002-Hampt-aka	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
12.3	99.3	E-MEXP-1138-raw-cel-1432772778
12.0	99.3	E-MEXP-1138-raw-cel-1432772746
11.9	99.3	E-MEXP-1138-raw-cel-1432773162
11.9	99.3	E-MEXP-1138-raw-cel-1432773386
11.7	99.3	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.7	99.3	GSM133894	Schroeder_1-12_JS44-starve-96h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
11.6	99.3	E-MEXP-285-raw-cel-440782725
11.2	99.2	GSM157324	Hammond_3-17_Potassium-starved-root_Rep3_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
11.2	99.2	GSM142725	CH001_ATH1_A004-Hampt-c1a	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
11.1	99.2	GSM142730	CH001_ATH1_A009-Hampt-wsc_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
11.1	99.2	GSM131644	ATGE_2_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
11.0	99.2	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	E-MEXP-1138-raw-cel-1432773194
10.6	99.2	E-MEXP-1138-raw-cel-1432773354
10.6	99.2	GSM142632	MC002_ATH1_A4.1-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.2	99.2	E-MEXP-1138-raw-cel-1432773290
10.1	99.2	GSM131643	ATGE_2_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.8	99.1	GSM133892	Schroeder_1-6_JS43-control-96h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
9.7	99.1	E-MEXP-1138-raw-cel-1432773258
9.7	99.1	GSM142728	CH001_ATH1_A007-Hampt-c4b	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
9.7	99.1	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
9.4	99.1	E-MEXP-828-raw-cel-1156922533
9.3	99.1	E-MEXP-1138-raw-cel-1432773322
8.9	99.0	GSM157325	Hammond_3-18_Caesium-treated-root_Rep3_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
8.9	99.0	GSM142726	CH001_ATH1_A005-Hampt-wsb_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
8.7	99.0	E-MEXP-828-raw-cel-1156922829
8.6	99.0	E-MEXP-265-raw-cel-414617890

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.016 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.029	1	GO:0007264	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.016	1	GO:0015031	The directed movement of proteins into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.083 1 04650 Natural killer cell mediated cytotoxicity
0.065 1 00460 Cyanoamino acid metabolism
0.022 1 00500 Starch and sucrose metabolism

SF	Genes	KEGG ID	Pathway name
0.083	1	04650	Natural killer cell mediated cytotoxicity
0.065	1	00460	Cyanoamino acid metabolism
0.022	1	00500	Starch and sucrose metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g18690
Gene name	AGP25 (ARABINOGALACTAN PROTEINS 25)
Module size	8 genes
NF	0.72
%ile	90.0

Co-expression analysis

Gene ID At5g18690 Gene name AGP25 (ARABINOGALACTAN PROTEINS 25) Module size 8 genes NF 0.72 %ile 90.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0291GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.0.0161GO:0015031The directed movement of proteins into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.083104650Natural killer cell mediated cytotoxicity0.065100460Cyanoamino acid metabolism0.022100500Starch and sucrose metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g18690

Gene name AGP25 (ARABINOGALACTAN PROTEINS 25)

Module size 8 genes

NF 0.72

%ile 90.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.016 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.

SF Genes KEGG ID Pathway name Link to KEGG
0.083 1 04650 Natural killer cell mediated cytotoxicity
0.065 1 00460 Cyanoamino acid metabolism
0.022 1 00500 Starch and sucrose metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays