Co-expression analysis

Gene ID At5g17970
Gene name disease resistance protein (TIR-NBS-LRR class), putative
Module size 93 genes
NF 0.38
%ile 52.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g17970831664disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAVO.I.H.G.S.X.
0.6579.60.75At1g54720841913early-responsive to dehydration protein-related / ERD protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6478.90.74At5g53640835445F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.5974.70.75At2g29780817528kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOVAFO.I.H.G.S.X.
0.5974.70.76At1g437153767310transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.74At1g36970840606-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.5873.80.73At4g037303770544transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.74At2g38590818441F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.5773.80.75At1g566753767473transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.77At3g266143768945transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.75At2g01790814710meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system;PMOFO.I.H.G.S.X.
0.5673.00.76At4g13610826994MEE57 (maternal effect embryo arrest 57)F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFVO.I.H.G.S.X.
0.5673.00.75At4g04730825808unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.5673.00.74At2g173303768013-putative obtusifoliol 14-alpha demethylase. Expressed pseudogene.O.I.H.G.S.X.
0.5673.00.75At5g332603771121transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.75At3g308303769152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.73At3g42690823289transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.76At3g22350821804F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.5469.50.76At5g02980831482kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOAO.I.H.G.S.X.
0.5469.50.74At1g80740844413CMT1 (CHROMOMETHYLASE 1)ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.O.I.H.G.S.X.
0.5368.60.76At4g097103770352transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.73At2g06820815244transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.75At2g37730818350fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.H.G.S.X.
0.5166.30.74At4g040003770309transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.74At5g10880830955tRNA synthetase-related / tRNA ligase-relatedF:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:prolyl-tRNA aminoacylation, translation;C:cytoplasm;BOMFAPO.I.H.G.S.X.
0.5166.30.75At2g161103768127-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.74At1g32270840119ATSYP24member of SYP2 Gene FamilyO.I.H.G.S.X.
0.5166.30.74At4g078103770274transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.76At5g35830833569ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAO.I.H.G.S.X.
0.5065.30.75At1g54550841897F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.78At2g29920817542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOO.I.H.G.S.X.
0.4862.50.75At4g08730826442unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.4862.50.73At2g139403768461transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.73At3g21170821669F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.4761.20.78At1g63200842624-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.20.73At4g077903769958transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.75At2g15520816044transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.75At2g155103768657transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.74At4g07510826201transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.74At3g422203769425transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.75At1g311003766864transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.75At4g35130829665pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBO.I.H.G.S.X.
0.4355.30.75At5g347903771183transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.74At1g41870840798transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.75At3g42070823176transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.74At5g35640833536-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.77At5g47260834773ATP binding / GTP binding / nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, GTP binding, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:cellular_component unknown;PMBOFAO.I.H.G.S.X.
0.4152.40.74At3g29260822582short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.4152.40.75At2g076603767968transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.78At2g42340818835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.4050.80.73At2g053903768626transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.73At1g353703766940transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.76At1g18200838399AtRABA6b (Arabidopsis Rab GTPase homolog A6b)F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:intracellular;MOFPBAVO.I.H.G.S.X.
0.4050.80.75At2g158703768350transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.76At2g29820817532kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOVFAO.I.H.G.S.X.
0.3948.40.74At5g28550832952-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.75At1g60720842366-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3948.40.74At4g055003769815-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.40.74At3g42940823349-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.70.74At5g28590832956DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.3745.00.75At3g56670824834-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3745.00.75At1g24650839079leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.3541.60.75At1g426503767267transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.74At4g16080827293unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3541.60.75At4g18840827618pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBAO.I.H.G.S.X.
0.3541.60.78At4g38070829963bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAVO.I.H.G.S.X.
0.3439.80.73At1g474653767381transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.74At2g22440816776-F:unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.3338.10.73At5g14900831342helicase associated (HA2) domain-containing proteinF:helicase activity;P:biological_process unknown;C:cellular_component unknown;MBFOPO.I.H.G.S.X.
0.3133.80.77At4g22440828339unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3133.80.76At4g10660826659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3133.80.75At5g351503771255transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.76At1g74630843802pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMFBO.I.H.G.S.X.
0.2830.30.74At5g56920835794-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.74At5g57450835850XRCC3Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentationO.I.H.G.S.X.
0.2522.60.75At4g35120829664kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPVBOFAO.I.H.G.S.X.
0.2217.50.76At4g35170829670-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.2115.80.74At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.80.74At2g25380817077-pseudogene of zinc finger protein-relatedO.I.H.G.S.X.
0.2115.80.74At5g28820832998unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.80.77At1g19930838582kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOVAO.I.H.G.S.X.
0.2115.80.74At2g29600817509kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBVOAFO.I.H.G.S.X.
0.2014.40.74At4g38870830042F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.1912.70.74At3g45510823691zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFO.I.H.G.S.X.
0.1912.70.74At2g072003768448cysteine-type peptidaseF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknownO.I.H.G.S.X.
0.1811.40.73At5g351303771249transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.74At1g77100844045peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.H.G.S.X.
0.1811.40.74At1g58390842208disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PBMFOAO.I.H.G.S.X.
0.1710.20.75At3g57440824911unknown proteinF:unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.146.80.74At1g335803766899transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.124.90.74At4g26340828740F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.103.40.74At3g08810820028kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.082.30.74At2g355903768541-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.799.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.999.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.199.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.999.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.899.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.499.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.199.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.399.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.899.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.499.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.399.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.099.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.999.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.499.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.199.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.599.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.399.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.999.6GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
19.199.6GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
18.399.5GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
16.899.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.399.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.499.5GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.399.4GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
10.799.2GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
10.099.2E-MEXP-285-raw-cel-440782725
9.799.1E-MEXP-285-raw-cel-440782791
9.599.1GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.499.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.099.1GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.099.1GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
8.699.0GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0352GO:0006306The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.Link to AmiGO
0.0263GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO
0.0211GO:0006433The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.026200270Cysteine and methionine metabolismLink to KEGG PATHWAY
0.017103440Homologous recombinationLink to KEGG PATHWAY
0.014104130SNARE interactions in vesicular transportLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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