Co-expression analysis

Gene ID At5g11110
Gene name ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)
Module size 57 genes
NF 0.52
%ile 73.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7586.91.00At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.O.I.H.G.S.X.
0.7385.50.69At1g12640837820membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFPO.I.H.G.S.X.
0.7184.20.67At1g78895844227-F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;PO.I.H.G.S.X.
0.6882.20.67At1g15800838149unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.68At5g02100831841UNE18 (UNFERTILIZED EMBRYO SAC 18)Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.O.I.H.G.S.X.
0.6781.60.68At1g05380837039DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFABO.I.H.G.S.X.
0.6579.60.70At5g64930836617CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).O.I.H.G.S.X.
0.6579.60.65At3g06190819793BPM2 (BTB-POZ AND MATH DOMAIN 2)F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.6378.10.63At4g15130827179catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseF:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPAO.I.H.G.S.X.
0.6378.10.66At5g02910831746F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.6176.70.67At2g02090814740ETL1F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVAO.I.H.G.S.X.
0.6176.70.63At3g07400819928lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMBO.I.H.G.S.X.
0.6075.70.64At5g08240830720unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.6075.70.63At4g39230830078isoflavone reductase, putativeencodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol.O.I.H.G.S.X.
0.5974.70.68At4g31420829269zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MFOPO.I.H.G.S.X.
0.5873.80.63At3g12140820389emsy N terminus domain-containing protein / ENT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.5773.80.64At1g17040838274SHA (SH2 DOMAIN PROTEIN A)Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.O.I.H.G.S.X.
0.5773.80.65At3g03970819552bindingF:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.80.66At5g58760835990DDB2 (damaged DNA-binding 2)F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.5773.80.66At1g17145838285protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPOMO.I.H.G.S.X.
0.5773.80.68At3g07020819887UDP-glucose:sterol glucosyltransferase (UGT80A2)F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOVO.I.H.G.S.X.
0.5773.80.66At2g44660819074transferase, transferring glycosyl groups / transferase, transferring hexosyl groupsF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum membrane;MFOPBO.I.H.G.S.X.
0.5773.80.65At3g58800825049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PVOO.I.H.G.S.X.
0.5570.60.66At2g41630818761TFIIB (TRANSCRIPTION FACTOR II B)Encodes the transcription factor TFIIB.O.I.H.G.S.X.
0.5570.60.69At5g04250830304OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MPOFVBO.I.H.G.S.X.
0.5570.60.65At2g31650817721ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX)Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.O.I.H.G.S.X.
0.5570.60.66At5g01450831860protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPVFO.I.H.G.S.X.
0.5469.50.65At1g34260840326phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity;P:phosphatidylinositol metabolic process;C:cellular_component unknown;MOFPAO.I.H.G.S.X.
0.5368.60.64At2g37060818282NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOO.I.H.G.S.X.
0.5368.60.66At5g24870832556zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;OMPFBVAO.I.H.G.S.X.
0.5267.40.63At1g47490841157ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)F:RNA binding;P:unknown;C:unknown;MPFOBVAO.I.H.G.S.X.
0.5267.40.65At3g20770821625EIN3 (ETHYLENE-INSENSITIVE3)ethylene-insensitive3O.I.H.G.S.X.
0.5166.30.65At1g19370838520unknown proteinF:unknown;P:unknown;C:endoplasmic reticulum;POO.I.H.G.S.X.
0.5166.30.67At3g20040821543ATHXK4F:hexokinase activity, fructokinase activity, glucokinase activity, ATP binding;P:glucose catabolic process to butanediol, glucose catabolic process to lactate and acetate, glycolysis, anaerobic glycolysis, glucose catabolic process to D-lactate and ethanol;C:mitochondrion;MFPOBO.I.H.G.S.X.
0.5166.30.67At1g70590843396F-box family proteinF:binding;P:biological_process unknown;C:chloroplast;BOFMPVO.I.H.G.S.X.
0.5065.30.67At4g32440829379agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.5065.30.68At5g58510835964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBO.I.H.G.S.X.
0.5065.30.65At1g10090837544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOO.I.H.G.S.X.
0.4963.50.63At5g25380832610CYCA2core cell cycle genesO.I.H.G.S.X.
0.4862.50.65At1g11100837651SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-relatedF:in 6 functions;P:unknown;C:unknown;MBFOPVAO.I.H.G.S.X.
0.4862.50.64At5g54280835516ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)Type VII myosin geneO.I.H.G.S.X.
0.4761.20.64At1g15430838114-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.20.63At2g27050817247EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)ethylene-insensitive3-like1 (EIL1)O.I.H.G.S.X.
0.4761.20.63At2g45490819157AtAUR3 (ATAURORA3)Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.O.I.H.G.S.X.
0.4761.20.64At4g30560829179ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.4761.20.64At3g14890820718phosphoesteraseF:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBAO.I.H.G.S.X.
0.4659.80.64At1g18940838475nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BPOFMAO.I.H.G.S.X.
0.4659.80.65At5g49900835053catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOAO.I.H.G.S.X.
0.4558.30.64At4g17550827470transporter-relatedF:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPAO.I.H.G.S.X.
0.4558.30.63At5g46250834667RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPFOO.I.H.G.S.X.
0.4558.30.64At5g05130830395SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 7 functions;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.4457.20.63At5g16630831525RAD4F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOPO.I.H.G.S.X.
0.4457.20.68At2g26800817221hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putativeF:hydroxymethylglutaryl-CoA lyase activity, catalytic activity;P:leucine metabolic process, metabolic process;C:mitochondrion;BOAFMPO.I.H.G.S.X.
0.4457.20.63At2g30580817608DRIP2 (DREB2A-INTERACTING PROTEIN 2)Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.O.I.H.G.S.X.
0.4355.30.63At3g48440824003zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.2726.20.68At1g79270844267ECT8 (evolutionarily conserved C-terminal region 8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.1912.70.64At5g02170831896amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
50.799.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
50.799.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.599.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.899.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.199.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.899.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.699.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.199.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.599.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.099.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.999.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.799.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.099.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.599.7GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
25.399.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.399.6GSM311277Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
19.899.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.199.5GSM311278Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
17.899.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.599.5E-ATMX-35-raw-cel-1574334832
16.699.5E-ATMX-35-raw-cel-1574334816
16.299.5GSM258004LMPC-derived phloem_3GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
16.199.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.799.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.699.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.499.4E-ATMX-35-raw-cel-1574334800
14.099.4GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
13.699.4GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.799.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.799.2GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO
10.199.2GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.099.1GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.999.0GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination StudyLink to GEO
8.699.0GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0512GO:0010182The process by which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes.Link to AmiGO
0.0402GO:0009873A series of molecular signals mediated by ethylene (ethene).Link to AmiGO
0.0341GO:0006551The chemical reactions and pathways involving leucine, 2-amino-4-methylpentanoic acid.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.037203420Nucleotide excision repairLink to KEGG PATHWAY
0.033100072Synthesis and degradation of ketone bodiesLink to KEGG PATHWAY
0.025100650Butanoate metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage