Co-expression analysis

Gene ID At5g10260
Gene name AtRABH1e (Arabidopsis Rab GTPase homolog H1e)
Module size 69 genes
NF 0.38
%ile 52.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g10260830890AtRABH1e (Arabidopsis Rab GTPase homolog H1e)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAO.I.H.G.S.X.
0.6378.10.92At5g35090833460unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5570.60.91At5g60740836195ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:endomembrane system, membrane;BOMFAPVO.I.H.G.S.X.
0.5469.50.89At3g10470820211zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;OMPFBO.I.H.G.S.X.
0.5065.30.89At1g11250837666SYP125 (SYNTAXIN OF PLANTS 125)member of SYP12 Gene FamilyO.I.H.G.S.X.
0.4963.50.90At3g07960819987phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:cellular_component unknown;OMBPFO.I.H.G.S.X.
0.4963.50.91At1g28550839755AtRABA1i (Arabidopsis Rab GTPase homolog A1i)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.H.G.S.X.
0.4963.50.90At1g54280841869haloacid dehalogenase-like hydrolase family proteinF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:phospholipid transport, ATP biosynthetic process;C:integral to membrane, membrane;MBOFPAVO.I.H.G.S.X.
0.4862.50.90At5g59370836056ACT4 (ACTIN 4)Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.O.I.H.G.S.X.
0.4862.50.89At5g64690836590neurofilament triplet H protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.4761.20.91At1g12070837759Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOO.I.H.G.S.X.
0.4761.20.90At2g20430816562RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue.O.I.H.G.S.X.
0.4761.20.89At4g30770829200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4761.20.88At3g12160820393RABA4D (RAB GTPASE HOMOLOG A4D)Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.O.I.H.G.S.X.
0.4761.20.89At3g01250821184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPO.I.H.G.S.X.
0.4659.80.90At4g13240826941ROPGEF9Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.H.G.S.X.
0.4659.80.90At5g52360835312ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)F:actin binding;P:biological_process unknown;C:intracellular;MPOFO.I.H.G.S.X.
0.4659.80.91At5g51030835176short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.4558.30.89At4g13450826977universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.30.92At4g34440829595protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAO.I.H.G.S.X.
0.4355.30.89At2g31830817740endonuclease/exonuclease/phosphatase family proteinF:inositol or phosphatidylinositol phosphatase activity;P:unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.4355.30.89At5g61980836319AGD1 (ARF-GAP domain 1)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD1 belongs to the class 1, together with AGD2, AGD3 and AGD4. Not expressed in hypocotyls and cotyledons.O.I.H.G.S.X.
0.4355.30.90At5g02570831878histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleolus;MPOFO.I.H.G.S.X.
0.4355.30.90At3g60570825228ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.4152.40.90At4g25590828664ADF7 (actin depolymerizing factor 7)F:actin binding;P:biological_process unknown;C:intracellular;MPOFO.I.H.G.S.X.
0.4152.40.90At5g26060832675S1 self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4050.80.89At1g73860843722ATP binding / microtubule motorF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.H.G.S.X.
0.4050.80.90At5g21050832229-F:unknown;P:unknown;C:chloroplast;MPOO.I.H.G.S.X.
0.4050.80.89At1g55570842006sks12 (SKU5 Similar 12)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.H.G.S.X.
0.3948.40.90At2g20700816598unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.3948.40.90At2g47050819319invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3846.70.89At5g13990831247ATEXO70C2 (exocyst subunit EXO70 family protein C2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.H.G.S.X.
0.3846.70.90At3g05140819676RBK2 (Rop Binding protein Kinases 2)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MPOBFVAO.I.H.G.S.X.
0.3846.70.89At3g01700821093AGP11Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth.O.I.H.G.S.X.
0.3745.00.88At3g20865821635AGP40 (arabinogalactan-protein 40)Encodes a putative arabinogalactan-protein (AGP40).O.I.H.G.S.X.
0.3745.00.88At1g29140839788pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3643.60.89At3g29060822550-F:unknown;P:unknown;C:integral to membrane;MFPOVBAO.I.H.G.S.X.
0.3643.60.90At5g14890831341NHL repeat-containing proteinF:unknown;P:unknown;C:endomembrane system;BOMPAO.I.H.G.S.X.
0.3643.60.89At1g01780839267LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.3541.60.89At5g01610831718unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3541.60.90At5g50030835067invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3541.60.89At5g57690835876diacylglycerol kinaseF:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOBO.I.H.G.S.X.
0.3541.60.89At2g33320817895C2 domain-containing proteinF:unknown;P:unknown;C:unknown;OMPFBAVO.I.H.G.S.X.
0.3541.60.89At1g52580841690ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAO.I.H.G.S.X.
0.3541.60.88At5g61720836294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.H.G.S.X.
0.3439.80.88At4g38230829980CPK26member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.3439.80.88At3g01240821219unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.
0.3439.80.90At3g21180821671ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.O.I.H.G.S.X.
0.3439.80.88At3g04690819627protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.3439.80.88At5g19580832078glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOO.I.H.G.S.X.
0.3439.80.88At3g62180825391invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3338.10.92At2g29050817453ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)F:unknown;P:unknown;C:Golgi apparatus;BOMPFAO.I.H.G.S.X.
0.3338.10.88At4g28280828943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.3338.10.89At4g04930825832DES-1-LIKEEncodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.O.I.H.G.S.X.
0.3338.10.88At4g39110830066protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.H.G.S.X.
0.3338.10.90At4g20160827762-F:unknown;P:unknown;C:chloroplast;MOFBPVAO.I.H.G.S.X.
0.3338.10.88At1g52240841654ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .O.I.H.G.S.X.
0.3338.10.88At4g02250827589invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3338.10.88At1g10770837620invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3235.70.88At3g26860822302-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3235.70.88At5g09430830802hydrolaseF:hydrolase activity;P:unknown;C:unknown;BOMPAFO.I.H.G.S.X.
0.3235.70.88At1g70790843416C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.3235.70.89At3g19310821465phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.S.X.
0.3235.70.88At5g26150832684protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.3133.80.88At3g43120823371auxin-responsive protein-relatedF:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.H.G.S.X.
0.3032.10.89At1g12450837802-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFAO.I.H.G.S.X.
0.3032.10.89At5g61360836257unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3032.10.90At2g02970814826nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:biological_process unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.2930.30.88At2g20320816551-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.099.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.399.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.099.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.299.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.199.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.499.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.799.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.099.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.099.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.399.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.299.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.999.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.999.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.999.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.499.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.099.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.899.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.899.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.199.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.899.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.899.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.899.6E-MEXP-807-raw-cel-1173273170
19.299.6E-MEXP-807-raw-cel-1173273060
18.399.5GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.099.5E-MEXP-807-raw-cel-1173273223
17.299.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.699.5GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.499.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.399.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.099.5GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.499.5GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
15.199.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.099.4GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.399.4E-MEXP-1443-raw-cel-1581869515
13.699.4E-MEXP-807-raw-cel-1173273116
13.499.4GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
11.599.3GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.499.3E-MEXP-807-raw-cel-1173273196
9.799.1E-MEXP-807-raw-cel-1173273252

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0674GO:0009860Growth of pollen via tip extension of the intine wall.Link to AmiGO
0.0312GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.Link to AmiGO
0.0291GO:0007338The union of male and female gametes to form a zygote.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.025100600Sphingolipid metabolismLink to KEGG PATHWAY
0.020100053Ascorbate and aldarate metabolismLink to KEGG PATHWAY
0.019100562Inositol phosphate metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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