Co-expression analysis

Gene ID At5g10180
Gene name AST68
Module size 82 genes
NF 0.32
%ile 41.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.H.G.S.X.
0.6075.70.79At2g21340816673antiporter/ drug transporterF:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast;BOPAFMO.I.H.G.S.X.
0.5368.60.76At4g27710828885CYP709B3member of CYP709BO.I.H.G.S.X.
0.5267.40.76At3g14650820693CYP72A11putative cytochrome P450O.I.H.G.S.X.
0.5065.30.76At3g26070822204plastid-lipid associated protein PAP / fibrillin family proteinF:structural molecule activity;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOO.I.H.G.S.X.
0.5065.30.77At4g33500829488protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:chloroplast;MOBFPAVO.I.H.G.S.X.
0.4963.50.76At5g22620832325phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast;BOMFPAO.I.H.G.S.X.
0.4761.20.78At5g42390834245metalloendopeptidaseF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:mitochondrion, chloroplast stroma, chloroplast;BOMFPAVO.I.H.G.S.X.
0.4659.80.76At5g58140835926PHOT2 (PHOTOTROPIN 2)Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.O.I.H.G.S.X.
0.4659.80.78At1g67840843110CSK (CHLOROPLAST SENSOR KINASE)Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.O.I.H.G.S.X.
0.4659.80.77At5g04360830315ATLDA (LIMIT DEXTRINASE)Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.O.I.H.G.S.X.
0.4659.80.77At5g42310834236pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.4558.30.79At5g60600836181HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.O.I.H.G.S.X.
0.4457.20.76At3g10230820185LYC (LYCOPENE CYCLASE)Encodes a protein with lycopene β-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the ε-cyclase which adds only one ring, the β-cyclase introduces a ring at both ends of lycopene to form the bicyclic β-carotene.O.I.H.G.S.X.
0.4457.20.76At5g57350835841AHA3member of Plasma membrane H+-ATPase familyO.I.H.G.S.X.
0.4457.20.76At4g02260828096RSH1 (RELA-SPOT HOMOLOG 1)F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFVO.I.H.G.S.X.
0.4457.20.81At3g02020821287AK3 (ASPARTATE KINASE 3)encodes a monofunctional aspartate kinaseO.I.H.G.S.X.
0.4355.30.77At1g54350841876ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPVO.I.H.G.S.X.
0.4355.30.77At3g19720821509ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5)Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFPARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.O.I.H.G.S.X.
0.4355.30.76At4g37000829854ACD2 (ACCELERATED CELL DEATH 2)Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection. Its product was shown to display red chlorophyll catabolite reductase (RCCR), which catalyzes one step in the breakdown of the porphyrin component of chlorophyll. The enzyme was further assessed to be a Type-1 (pFCC-1-producing) RCCR.Upon P. syringae infection, ACD2 localization shifts from being largely in chloroplasts to partitioning to chloroplasts, mitochondria, and to a small extent, cytosol. Overexpression of ACD2 delayed cell death and the replication of P. syringae.O.I.H.G.S.X.
0.4355.30.78At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.O.I.H.G.S.X.
0.4355.30.76At3g43540823446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.4355.30.77At2g39930818580ISA1 (ISOAMYLASE 1)Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.O.I.H.G.S.X.
0.4253.90.76At2g03390814868uvrB/uvrC motif-containing proteinF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;OBMFPO.I.H.G.S.X.
0.4253.90.77At3g63520825527CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.O.I.H.G.S.X.
0.4152.40.76At1g23400838948CAF2Promotes the splicing of chloroplast group II introns.O.I.H.G.S.X.
0.4152.40.77At4g30993829225unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4050.80.76At3g45780823721PHOT1 (PHOTOTROPIN 1)Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.O.I.H.G.S.X.
0.4050.80.77At1g36320840539unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.4050.80.77At4g01800827922preprotein translocase secA subunit, putativeF:protein binding, ATP binding;P:intracellular protein transport, protein targeting, protein import;C:chloroplast stroma, chloroplast, chloroplast envelope;OBPMAO.I.H.G.S.X.
0.3948.40.76At1g24040839016GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:chloroplast;PBAOMO.I.H.G.S.X.
0.3948.40.79At3g20930821642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBAO.I.H.G.S.X.
0.3846.70.76At4g14240827065-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.3846.70.77At5g35170833471adenylate kinase family proteinF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BOMFPAO.I.H.G.S.X.
0.3745.00.76At1g68830843215STN7 (Stt7 homolog STN7)STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptationO.I.H.G.S.X.
0.3745.00.76At3g10970820268haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPAMFO.I.H.G.S.X.
0.3745.00.77At5g03900831927-F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BPOO.I.H.G.S.X.
0.3643.60.77At1g03160839566FZL (FZO-LIKE)A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.O.I.H.G.S.X.
0.3643.60.76At3g44620823588protein tyrosine phosphataseF:protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation;C:chloroplast stroma, chloroplast;BOMFPO.I.H.G.S.X.
0.3643.60.77At3g05350819699aminopeptidase/ hydrolaseF:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAPO.I.H.G.S.X.
0.3541.60.77At4g15560827230CLA1 (CLOROPLASTOS ALTERADOS 1)Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in ArabidopsisO.I.H.G.S.X.
0.3541.60.77At4g14210827061PDS3 (PHYTOENE DESATURASE 3)Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.O.I.H.G.S.X.
0.3541.60.76At4g29750829097RNA bindingF:RNA binding;P:unknown;C:chloroplast;PMOFAO.I.H.G.S.X.
0.3541.60.76At1g49970841420CLPR1Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).O.I.H.G.S.X.
0.3439.80.77At5g03910830269ATATH12member of ATH subfamilyO.I.H.G.S.X.
0.3338.10.77At1g32160840108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.3133.80.76At1g22850838890-F:unknown;P:biological_process unknown;C:chloroplast;BOMPFAO.I.H.G.S.X.
0.3032.10.76At3g58010824970unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFOO.I.H.G.S.X.
0.2930.30.76At5g48790834937unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.2930.30.76At3g16520820900UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:in 6 functions;P:metabolic process;C:cellular_component unknown;PMVBOFO.I.H.G.S.X.
0.2930.30.76At4g17370827449oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAPO.I.H.G.S.X.
0.2930.30.76At2g38330818413MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPAFMO.I.H.G.S.X.
0.2930.30.76At3g29320822590glucan phosphorylase, putativeEncodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.O.I.H.G.S.X.
0.2930.30.76At5g01920831741STN8Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2.O.I.H.G.S.X.
0.2930.30.76At5g57930835904APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)ACCUMULATION OF PHOTOSYSTEM ONE 2O.I.H.G.S.X.
0.2830.30.76At5g4642083468516S rRNA processing protein RimM familyF:ribosome binding, nucleotidyltransferase activity;P:metabolic process, rRNA processing, ribosome biogenesis;C:chloroplast;BOMFPO.I.H.G.S.X.
0.2830.30.77At2g30950817646VAR2 (VARIEGATED 2)Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.O.I.H.G.S.X.
0.2830.30.76At4g17360827448formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferaseencodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.O.I.H.G.S.X.
0.2830.30.76At3g26085822206CAAX amino terminal protease family proteinF:molecular_function unknown;P:proteolysis;C:membrane;BOPAO.I.H.G.S.X.
0.2726.20.78At5g22830832346ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)putative Mg(2+) transport proteinO.I.H.G.S.X.
0.2726.20.77At5g08650830766GTP-binding protein LepA, putativeF:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPAO.I.H.G.S.X.
0.2726.20.78At5g42030834208ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.76At5g61670836289-Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.O.I.H.G.S.X.
0.2624.40.77At5g12150831088pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing proteinEncodes a protein with similarity to REN1, a Rho GTPase activating protein.O.I.H.G.S.X.
0.2522.60.77At2g28800817429ALB3 (ALBINO 3)member of Chloroplast membrane protein ALBINO3 familyO.I.H.G.S.X.
0.2522.60.76At1g80030844343DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVO.I.H.G.S.X.
0.2522.60.76At3g04890819649unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.H.G.S.X.
0.2522.60.76At3g27925822416DEGP1 (DegP protease 1)Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.O.I.H.G.S.X.
0.2522.60.78At5g14260831276SET domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOO.I.H.G.S.X.
0.2420.70.77At2g35490818114plastid-lipid associated protein PAP, putativeF:structural molecule activity;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOMO.I.H.G.S.X.
0.2420.70.76At5g24930832563zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular, chloroplast;POMO.I.H.G.S.X.
0.2420.70.76At4g35760829729-F:unknown;P:unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.2319.30.76At5g19220832042APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.O.I.H.G.S.X.
0.2115.80.77At5g52440835320HCF106HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatBO.I.H.G.S.X.
0.2014.40.76At2g35450818110catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPMFO.I.H.G.S.X.
0.2014.40.76At1g35420840434dienelactone hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;BFOPMAO.I.H.G.S.X.
0.1912.70.76At5g14970831349unknown proteinF:unknown;P:unknown;C:unknown;BOPO.I.H.G.S.X.
0.1912.70.76At5g45170834553CbbY protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOO.I.H.G.S.X.
0.1912.70.76At5g03880831679electron carrierF:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFMO.I.H.G.S.X.
0.1811.40.76At4g15110827177CYP97B3member of CYP97BO.I.H.G.S.X.
0.1710.20.76At1g30210839901TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24)TCP family protein involved in heterochronic regulation of leaf differentiation.O.I.H.G.S.X.
0.1710.20.76At4g03520825653ATHM2chloroplast localized thioredoxin, similar to prokaryotic types.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.099.8GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
50.699.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
43.099.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.099.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.599.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.799.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.699.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.599.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.599.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.699.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.599.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.599.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.199.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.199.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.099.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.699.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.599.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.999.5E-ATMX-35-raw-cel-1574334800
16.999.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.999.4GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.399.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.399.4E-ATMX-35-raw-cel-1574334832
12.999.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.999.3E-ATMX-35-raw-cel-1574334816

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0683GO:0016120The chemical reactions and pathways resulting in the formation of carotenes, hydrocarbon carotenoids.Link to AmiGO
0.0603GO:0010027A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane.Link to AmiGO
0.0583GO:0046777The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.038200906Carotenoid biosynthesisLink to KEGG PATHWAY
0.037203060Protein exportLink to KEGG PATHWAY
0.033200900Terpenoid backbone biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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