Co-expression analysis

Gene ID At5g08350
Gene name GRAM domain-containing protein / ABA-responsive protein-related
Module size 12 genes
NF 0.13
%ile 9.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g08350830733GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2014.40.74At5g59150836033ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBVAO.I.H.G.S.X.
0.2014.40.75At5g63620836482oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVO.I.H.G.S.X.
0.1811.40.75At1g18270838407ketose-bisphosphate aldolase class-II family proteinF:in 8 functions;P:pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process;C:nucleus;BOFMPAO.I.H.G.S.X.
0.1710.20.74At4g17486827462unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.1710.20.74At5g64220836543calmodulin-binding proteinF:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:unknown;MOFBPVAO.I.H.G.S.X.
0.168.80.74At5g65660836692hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMOFO.I.H.G.S.X.
0.135.80.74At5g55000835591FIP2FH protein interacting protein FIP2O.I.H.G.S.X.
0.135.80.74At2g43400818941ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.O.I.H.G.S.X.
0.114.10.74At4g33940829539zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;MOPFO.I.H.G.S.X.
0.092.80.75At1g71860843516PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.O.I.H.G.S.X.
0.040.90.74At1g75440843880UBC16 (ubiquitin-conjugating enzyme 16)F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MFOPVBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
98.499.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
87.499.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
73.299.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
72.599.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
56.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.199.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.799.8E-MEXP-1592-raw-cel-1617526952
46.099.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
44.899.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.499.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.899.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.199.8E-MEXP-1592-raw-cel-1617526888
41.799.8E-MEXP-1592-raw-cel-1617526984
41.299.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.699.8E-MEXP-1592-raw-cel-1617526856
39.799.8E-MEXP-1592-raw-cel-1617526848
39.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.499.8E-MEXP-1592-raw-cel-1617526920
38.199.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.399.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.599.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.299.7E-MEXP-1592-raw-cel-1617526824
34.499.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.299.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.199.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.299.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.599.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.499.7E-MEXP-1592-raw-cel-1617526976
30.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.599.7E-MEXP-1592-raw-cel-1617526816
29.499.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.299.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.299.7E-MEXP-1592-raw-cel-1617526944
23.499.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.699.6E-MEXP-1592-raw-cel-1617526912
20.799.6E-MEXP-1592-raw-cel-1617526880
8.799.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1431GO:0006573The chemical reactions and pathways involving valine, 2-amino-3-methylbutanoic acid.Link to AmiGO
0.1251GO:0007243A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound.Link to AmiGO
0.0911GO:0009646A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.025100903Limonene and pinene degradationLink to KEGG PATHWAY
0.018104120Ubiquitin mediated proteolysisLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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