Co-expression analysis

Gene ID At5g08240
Gene name unknown protein
Module size 50 genes
NF 0.58
%ile 79.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g08240830720unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.8190.40.84At1g01340838832ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.7989.10.85At4g31420829269zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MFOPO.I.H.G.S.X.
0.7888.60.86At1g78895844227-F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;PO.I.H.G.S.X.
0.7184.20.85At4g02730828189transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAVO.I.H.G.S.X.
0.7184.20.80At4g39230830078isoflavone reductase, putativeencodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol.O.I.H.G.S.X.
0.7083.50.85At1g70590843396F-box family proteinF:binding;P:biological_process unknown;C:chloroplast;BOFMPVO.I.H.G.S.X.
0.6982.90.83At3g07020819887UDP-glucose:sterol glucosyltransferase (UGT80A2)F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOVO.I.H.G.S.X.
0.6882.20.85At4g32440829379agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6882.20.84At5g02100831841UNE18 (UNFERTILIZED EMBRYO SAC 18)Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.O.I.H.G.S.X.
0.6882.20.84At1g12640837820membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFPO.I.H.G.S.X.
0.6882.20.84At2g39420818527esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;BOPMFVAO.I.H.G.S.X.
0.6781.60.81At5g54280835516ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)Type VII myosin geneO.I.H.G.S.X.
0.6680.10.83At1g15430838114-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6680.10.80At3g12140820389emsy N terminus domain-containing protein / ENT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.6478.90.81At3g06190819793BPM2 (BTB-POZ AND MATH DOMAIN 2)F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.6176.70.81At4g30560829179ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.6176.70.79At5g58760835990DDB2 (damaged DNA-binding 2)F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.6176.70.81At2g02090814740ETL1F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVAO.I.H.G.S.X.
0.6176.70.79At3g15620820804UVR3 (UV REPAIR DEFECTIVE 3)Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.O.I.H.G.S.X.
0.5873.80.81At1g18940838475nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BPOFMAO.I.H.G.S.X.
0.5873.80.82At1g11100837651SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-relatedF:in 6 functions;P:unknown;C:unknown;MBFOPVAO.I.H.G.S.X.
0.5873.80.81At5g05130830395SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 7 functions;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.5773.80.82At5g16630831525RAD4F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOPO.I.H.G.S.X.
0.5673.00.79At3g48440824003zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.5673.00.81At2g25560817094DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.H.G.S.X.
0.5673.00.83At5g49900835053catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOAO.I.H.G.S.X.
0.5570.60.80At2g30580817608DRIP2 (DREB2A-INTERACTING PROTEIN 2)Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.O.I.H.G.S.X.
0.5570.60.83At5g09800830840U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFO.I.H.G.S.X.
0.5469.50.83At1g05380837039DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFABO.I.H.G.S.X.
0.5368.60.81At1g77250844061PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFOO.I.H.G.S.X.
0.5368.60.82At5g64930836617CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).O.I.H.G.S.X.
0.5368.60.82At5g42010834206WD-40 repeat family proteinF:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPAO.I.H.G.S.X.
0.5267.40.81At1g15800838149unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5267.40.79At4g37280829882MRG family proteinF:chromatin binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;MFPOBO.I.H.G.S.X.
0.5267.40.78At1g48310841251CHR18F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.5267.40.82At1g64610842769WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAO.I.H.G.S.X.
0.5267.40.79At2g06040815159-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.5166.30.81At5g02910831746F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.5065.30.78At1g79950844335helicase-relatedF:in 6 functions;P:regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion;MBOFAPVO.I.H.G.S.X.
0.5065.30.79At1g77410844078BGAL16 (beta-galactosidase 16)F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOAO.I.H.G.S.X.
0.5065.30.79At2g41630818761TFIIB (TRANSCRIPTION FACTOR II B)Encodes the transcription factor TFIIB.O.I.H.G.S.X.
0.5065.30.80At5g58190835931ECT10F:unknown;P:unknown;C:unknown;MPFOO.I.H.G.S.X.
0.5065.30.80At4g17483827461palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.H.G.S.X.
0.4963.50.78At5g27610832823DNA binding / transcription factorF:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVO.I.H.G.S.X.
0.4963.50.78At5g10950830962cylicin-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.H.G.S.X.
0.4457.20.78At3g03970819552bindingF:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.40.81At5g01450831860protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPVFO.I.H.G.S.X.
0.4050.80.82At3g20770821625EIN3 (ETHYLENE-INSENSITIVE3)ethylene-insensitive3O.I.H.G.S.X.
0.3439.80.81At5g46250834667RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPFOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.399.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.199.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.699.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.999.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.399.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.099.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.499.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
45.299.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.499.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.099.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.299.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.899.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.199.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.599.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.699.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.299.7GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
31.099.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.599.7GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
28.099.7GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
27.399.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.899.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.199.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.799.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.399.6GSM311277Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
20.199.6GSM311278Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
19.599.6E-ATMX-35-raw-cel-1574334832
18.899.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.799.5E-ATMX-35-raw-cel-1574334816
18.399.5GSM258004LMPC-derived phloem_3GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
16.599.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
16.299.5E-ATMX-35-raw-cel-1574334800
15.299.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
15.299.4GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
9.899.1GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.899.1GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.699.1GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.399.1GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
8.999.0GSM258002LMPC-derived phloem_1GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
8.999.0GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.899.0GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0632GO:0006811The directed movement of charged atoms or small charged molecules into, out of, within or between cells.Link to AmiGO
0.0562GO:0010182The process by which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes.Link to AmiGO
0.0381GO:0009868The series of molecular signals mediated by jasmonic acid involved in jasmonic acid/ethylene (ethene) dependent systemic resistance.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.040203420Nucleotide excision repairLink to KEGG PATHWAY
0.024103022Basal transcription factorsLink to KEGG PATHWAY
0.013104120Ubiquitin mediated proteolysisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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