CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g04980

Gene name endonuclease/exonuclease/phosphatase family protein

Module size 5 genes

NF 0.03

%ile 1.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.29 30.3 1.00 At5g04980 830380 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.55 70.6 0.81 At2g03500 814878 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;OFPMBAV O.I. H.G. S.X.
0.04 0.9 0.83 At1g04780 839414 ankyrin repeat family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFBV O.I. H.G. S.X.
0.02 0.4 0.82 At1g07640 837277 OBP2 A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. O.I. H.G. S.X.
0.01 0.2 0.81 At1g10900 837633 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF O.I. H.G. S.X.

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Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 99.3 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.6 99.2 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.7 99.1 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.5 99.1 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.1 99.1 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.1 99.1 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.9 99.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.8 99.0 GSM133778 Lindsey_1-2_globular-apical_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.5 99.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.1 98.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
7.9 98.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0009625 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect.
0.118 1 GO:0046488 The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
0.016 1 GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.048 1 00562 Inositol phosphate metabolism
0.048 1 04070 Phosphatidylinositol signaling system
0.029 1 04144 Endocytosis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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