Co-expression analysis

Gene ID At5g03630
Gene name ATMDAR2
Module size 7 genes
NF 0.26
%ile 28.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2930.31.00At5g03630831774ATMDAR2F:monodehydroascorbate reductase (NADH) activity;P:response to cadmium ion, response to salt stress;C:cytosol;BOMFPAO.I.H.G.S.X.
0.3338.10.86At2g22480816781PFK5 (PHOSPHOFRUCTOKINASE 5)F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAVO.I.H.G.S.X.
0.2930.30.89At2g17720816281oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFVO.I.H.G.S.X.
0.2930.30.85At3g60450825216-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOFPMO.I.H.G.S.X.
0.2522.60.85At2g17130816218IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2)O.I.H.G.S.X.
0.2319.30.85At3g11330820306leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MPBOFAVO.I.H.G.S.X.
0.2014.40.87At5g17380831604pyruvate decarboxylase family proteinF:pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity;P:unknown;C:cellular_component unknown;OBFPAMVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
141.299.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
99.599.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
93.099.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
88.899.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
82.899.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
78.499.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
75.299.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
71.999.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
69.799.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
66.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
66.099.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
64.599.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
63.699.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
61.199.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
59.899.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
59.799.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
59.099.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
58.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.899.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
51.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.999.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
50.599.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.999.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
47.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.599.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.999.7GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
21.099.6GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.399.4GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
13.599.4GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
13.099.4GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
13.099.4E-MEXP-1138-raw-cel-1432772874
12.599.3E-MEXP-1138-raw-cel-1432772778
12.499.3GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.199.3GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
11.999.3E-MEXP-1138-raw-cel-1432773034
11.999.3GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.899.3E-MEXP-1138-raw-cel-1432772746
11.799.3GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
11.699.3E-MEXP-1138-raw-cel-1432773098
11.499.3GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
11.399.3E-MEXP-1138-raw-cel-1432772842
11.299.2E-MEXP-1138-raw-cel-1432773066
11.299.2E-MEXP-1138-raw-cel-1432773386
11.199.2E-MEXP-1138-raw-cel-1432773002
11.199.2E-MEXP-1138-raw-cel-1432772810
11.099.2E-MEXP-1138-raw-cel-1432773130
10.999.2GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.999.2GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
10.899.2E-MEXP-1138-raw-cel-1432772938
10.799.2E-ATMX-33-raw-cel-1562596174
10.499.2GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.399.2GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.399.2GSM106913opr3_JA_8 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
10.399.2E-MEXP-1138-raw-cel-1432772522
10.399.2E-MEXP-1138-raw-cel-1432772714
10.199.2GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
10.199.2E-MEXP-1138-raw-cel-1432772618
9.999.1GSM106969opr3_OPDA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.999.1E-MEXP-1138-raw-cel-1432773322
9.999.1E-MEXP-1138-raw-cel-1432772970
9.799.1E-MEXP-1138-raw-cel-1432773258
9.799.1E-MEXP-1138-raw-cel-1432773290
9.799.1E-MEXP-1138-raw-cel-1432772906
9.799.1E-MEXP-1138-raw-cel-1432772586
9.699.1GSM106920opr3_OPDA_0.5 hr_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.699.1E-MEXP-1138-raw-cel-1432772650
9.599.1GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.499.1E-MEXP-1138-raw-cel-1432772554
9.499.1GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.399.1GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)Link to GEO
9.299.1E-MEXP-1138-raw-cel-1432773226
9.199.1GSM106827opr3_0 hr_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.199.1GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
9.099.1E-MEXP-1138-raw-cel-1432772682
8.999.0E-MEXP-1138-raw-cel-1432773162
8.699.0GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.699.0GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.699.0E-MEXP-849-raw-cel-1181980998

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1111GO:0018401The posttranslational modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase.Link to AmiGO
0.0831GO:0006099A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.Link to AmiGO
0.0511GO:0019538The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.051100053Ascorbate and aldarate metabolismLink to KEGG PATHWAY
0.050100052Galactose metabolismLink to KEGG PATHWAY
0.038100051Fructose and mannose metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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