Co-expression analysis

Gene ID At5g03180
Gene name zinc finger (C3HC4-type RING finger) family protein
Module size 5 genes
NF 0.33
%ile 44.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2522.61.00At5g03180831897zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVO.I.H.G.S.X.
0.4659.80.83At5g57260835831CYP71B10putative cytochrome P450O.I.H.G.S.X.
0.4355.30.76At3g16120820857dynein light chain, putativeF:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPFO.I.H.G.S.X.
0.3133.80.74At1g03990839342alcohol oxidase-relatedF:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFPAMO.I.H.G.S.X.
0.2726.20.76At5g66430836775S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosyl-Lmethionine:benzoic acid acid carboxyl methyl transferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
86.699.9E-MEXP-807-raw-cel-1173273088
77.299.9E-MEXP-807-raw-cel-1173273196
62.699.8E-MEXP-807-raw-cel-1173273116
44.299.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
28.799.7E-MEXP-807-raw-cel-1173273223
27.399.7E-ATMX-30-raw-cel-1513696906
24.199.6GSM131299AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
20.099.6GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
17.299.5GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.899.5GSM142878GW001_ATH1_A23-Warre-03fGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
16.699.5E-MEXP-807-raw-cel-1173273060
15.699.5GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
15.499.5E-ATMX-19-raw-cel-1375547479
14.599.4GSM38670DSNPGSE2268Arabidopsis polysome microarrayLink to GEO
13.899.4E-MEXP-807-raw-cel-1173273170
12.699.3GSM142879GW001_ATH1_A24-Warre-03fGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
11.899.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.799.3E-MEXP-807-raw-cel-1173273144
11.499.3GSM128713Thorlby_1-2_3h-post-freeze_REP3_ATH1GSE5524Gene Expression During Recovery from FreezingLink to GEO
10.899.2GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.699.2GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.399.2GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
10.299.2E-MEXP-475-raw-cel-680982485
10.099.2E-ATMX-30-raw-cel-1513696808
9.999.1GSM133777Lindsey_1-4_globular-basal_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.899.1GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.899.1GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.699.1GSM131300AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
9.599.1E-MEXP-807-raw-cel-1173273252
8.799.0GSM131304AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0831GO:0007017Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.028100945Stilbenoid, diarylheptanoid and gingerol biosynthesisLink to KEGG PATHWAY
0.027100903Limonene and pinene degradationLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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