Co-expression analysis

Gene ID At5g02940
Gene name -
Module size 68 genes
NF 0.25
%ile 26.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9998.11.00At5g02940831426-F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.H.G.S.X.
0.4253.90.77At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.O.I.H.G.S.X.
0.4253.90.78At3g26070822204plastid-lipid associated protein PAP / fibrillin family proteinF:structural molecule activity;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOO.I.H.G.S.X.
0.4152.40.81At5g35170833471adenylate kinase family proteinF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BOMFPAO.I.H.G.S.X.
0.3948.40.79At3g25690822157CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)actin binding protein required for normal chloroplast positioningO.I.H.G.S.X.
0.3846.70.78At1g66980843016protein kinase family protein / glycerophosphoryl diester phosphodiesterase family proteinF:kinase activity, glycerophosphodiester phosphodiesterase activity;P:protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process;C:unknown;MPOBFVAO.I.H.G.S.X.
0.3745.00.78At5g04360830315ATLDA (LIMIT DEXTRINASE)Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.O.I.H.G.S.X.
0.3745.00.77At4g10060826597catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOAO.I.H.G.S.X.
0.3643.60.85At3g45140823650LOX2 (LIPOXYGENASE 2)Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.O.I.H.G.S.X.
0.3541.60.77At3g61080825280fructosamine kinase family proteinF:kinase activity;P:biological_process unknown;C:mitochondrion, chloroplast;BOMFPAO.I.H.G.S.X.
0.3541.60.76At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.3439.80.77At3g18500821380-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.3439.80.77At4g17360827448formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferaseencodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.O.I.H.G.S.X.
0.3439.80.77At3g14650820693CYP72A11putative cytochrome P450O.I.H.G.S.X.
0.3439.80.79At5g60600836181HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.O.I.H.G.S.X.
0.3439.80.78At4g33500829488protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:chloroplast;MOBFPAVO.I.H.G.S.X.
0.3439.80.77At5g42310834236pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.3338.10.78At4g21210827869ATRP1 (PPDK REGULATORY PROTEIN)Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).O.I.H.G.S.X.
0.3235.70.78At5g48790834937unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.3235.70.78At5g37360833710unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.H.G.S.X.
0.3235.70.77At1g01790837332KEA1 (K EFFLUX ANTIPORTER 1)K efflux antiporter KEA1O.I.H.G.S.X.
0.3235.70.77At4g02260828096RSH1 (RELA-SPOT HOMOLOG 1)F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFVO.I.H.G.S.X.
0.3133.80.79At5g19220832042APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.O.I.H.G.S.X.
0.3133.80.77At2g03550814884hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.H.G.S.X.
0.3032.10.77At1g54350841876ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPVO.I.H.G.S.X.
0.3032.10.79At1g51110841534plastid-lipid associated protein PAP / fibrillin family proteinF:structural molecule activity;P:tryptophan biosynthetic process;C:chloroplast thylakoid membrane, chloroplast, membrane;PBOO.I.H.G.S.X.
0.3032.10.79At1g20020838591FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2)Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stromaO.I.H.G.S.X.
0.2930.30.77At5g08650830766GTP-binding protein LepA, putativeF:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPAO.I.H.G.S.X.
0.2930.30.78At4g37930829949SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.O.I.H.G.S.X.
0.2830.30.77At1g52510841682hydrolase, alpha/beta fold family proteinF:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFAO.I.H.G.S.X.
0.2830.30.78At1g56500842103haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, oxidoreductase activity, catalytic activity;P:metabolic process, cell redox homeostasis;C:chloroplast, chloroplast stroma;BOMPAFVO.I.H.G.S.X.
0.2726.20.78At4g34240829573ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)Aldehyde dehydrogenase induced by ABA and dehydrationO.I.H.G.S.X.
0.2726.20.79At2g30950817646VAR2 (VARIEGATED 2)Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.O.I.H.G.S.X.
0.2726.20.78At5g36700833635PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAPO.I.H.G.S.X.
0.2726.20.77At4g33470829484hda14 (histone deacetylase 14)Encodes HDA14, a member of the histone deacetylase family proteins.O.I.H.G.S.X.
0.2624.40.78At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.O.I.H.G.S.X.
0.2624.40.78At3g54050824572fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeF:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFAO.I.H.G.S.X.
0.2624.40.76At5g58260835938-Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.O.I.H.G.S.X.
0.2522.60.77At1g49380841361cytochrome c biogenesis protein familyF:molecular_function unknown;P:cytochrome complex assembly;C:chloroplast;BOPMO.I.H.G.S.X.
0.2522.60.77At2g30390817589FC2 (FERROCHELATASE 2)Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromesO.I.H.G.S.X.
0.2522.60.76At3g63140825489CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.O.I.H.G.S.X.
0.2420.70.76At5g38660833856APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)mutant has Altered acclimation responses;O.I.H.G.S.X.
0.2319.30.79At3g44620823588protein tyrosine phosphataseF:protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation;C:chloroplast stroma, chloroplast;BOMFPO.I.H.G.S.X.
0.2217.50.78At2g27680817314aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall;BOFPAMO.I.H.G.S.X.
0.2115.80.77At3g23400821921plastid-lipid associated protein PAP / fibrillin family proteinF:structural molecule activity, transporter activity, binding;P:transport;C:in 8 components;PBOO.I.H.G.S.X.
0.2115.80.80At4g02530827927chloroplast thylakoid lumen proteinF:molecular_function unknown;P:biological_process unknown;C:in 6 components;PO.I.H.G.S.X.
0.2115.80.76At1g08540837376SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.O.I.H.G.S.X.
0.2115.80.77At1g31800840067CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)Encodes a protein with β-ring carotenoid hydroxylase activity.O.I.H.G.S.X.
0.2014.40.79At1g03160839566FZL (FZO-LIKE)A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.O.I.H.G.S.X.
0.2014.40.77At2g31040817656ATP synthase protein I -relatedF:hydrogen ion transmembrane transporter activity;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), chloroplast;BPOVO.I.H.G.S.X.
0.2014.40.76At5g03880831679electron carrierF:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFMO.I.H.G.S.X.
0.1912.70.76At3g10970820268haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPAMFO.I.H.G.S.X.
0.1912.70.77At3g11170820288FAD7 (FATTY ACID DESATURASE 7)Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.O.I.H.G.S.X.
0.1912.70.77At5g66190836751FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.O.I.H.G.S.X.
0.1912.70.77At3g05350819699aminopeptidase/ hydrolaseF:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAPO.I.H.G.S.X.
0.1912.70.76At5g48300834883ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.O.I.H.G.S.X.
0.1710.20.76At3g04760819636pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.1710.20.77At3g12780820461PGK1 (PHOSPHOGLYCERATE KINASE 1)nuclear phosphoglycerate kinase (PGK1)O.I.H.G.S.X.
0.1710.20.78At3g61870825360unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPO.I.H.G.S.X.
0.1710.20.79At3g02570820656MEE31 (MATERNAL EFFECT EMBRYO ARREST 31)Encodes a protein with phosphomannose isomerase activity.O.I.H.G.S.X.
0.168.80.77At2g04700815013ferredoxin thioredoxin reductase catalytic beta chain family proteinF:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPAO.I.H.G.S.X.
0.157.80.77At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.H.G.S.X.
0.157.80.78At4g29750829097RNA bindingF:RNA binding;P:unknown;C:chloroplast;PMOFAO.I.H.G.S.X.
0.157.80.80At2g26540817195HEMDF:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAFO.I.H.G.S.X.
0.157.80.77At1g59840842278CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BOPO.I.H.G.S.X.
0.146.80.77At1g09795837509ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesisO.I.H.G.S.X.
0.114.10.77At1g72180843550leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.092.80.77At5g43745834395phosphotransferase-relatedF:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.199.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.099.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.699.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.799.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.499.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
39.199.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.899.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.299.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.699.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.499.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.499.7GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
27.099.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.199.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.699.6GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
21.999.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.999.5GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
18.099.5E-ATMX-35-raw-cel-1574334800
17.499.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.499.4E-ATMX-35-raw-cel-1574334832
13.099.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.499.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.499.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.599.2GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
10.299.2GSM133780Lindsey_1-3_globular-apical_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.999.1E-ATMX-35-raw-cel-1574334816
9.099.1GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0512GO:0019252The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.Link to AmiGO
0.0472GO:0010027A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane.Link to AmiGO
0.0402GO:0009853A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.049200340Histidine metabolismLink to KEGG PATHWAY
0.047200670One carbon pool by folateLink to KEGG PATHWAY
0.043300520Amino sugar and nucleotide sugar metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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