Co-expression analysis

Gene ID At4g38430
Gene name ROPGEF1
Module size 5 genes
NF 0.43
%ile 60.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.6075.71.00At4g38430830000ROPGEF1Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.O.I.H.G.S.X.
0.7586.90.91At1g60800842374NIK3 (NSP-INTERACTING KINASE 3)F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.3541.60.91At2g40540818649KT2 (POTASSIUM TRANSPORTER 2)putative potassium transporter AtKT2p (AtKT2) mRNA,O.I.H.G.S.X.
0.3338.10.90At1g31650840052ROPGEF14Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.H.G.S.X.
0.2726.20.92At2g22670816798IAA8IAA8 (IAA8) gene is auxin inducible.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
170.4100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
135.099.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
133.299.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
129.299.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
115.599.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
109.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
107.199.9E-MEXP-265-raw-cel-414618491
106.099.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
95.999.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
92.899.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
92.799.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
89.499.9E-MEXP-265-raw-cel-414618394
88.299.9E-MEXP-265-raw-cel-414618796
78.799.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
76.899.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
74.599.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
66.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
66.399.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
64.899.8GSM131655ATGE_27_AGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
60.799.8GSM131656ATGE_27_BGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
58.699.8E-MEXP-265-raw-cel-414618585
57.099.8E-MEXP-265-raw-cel-414618291
55.899.8E-MEXP-265-raw-cel-414618693
54.399.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.399.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.099.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.299.8GSM131657ATGE_27_CGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
47.299.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.399.8GSM133754Turner_A-8-Turne-WT-Base2_SLDGSE5729Role of COV in vascular patterningLink to GEO
40.799.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.699.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
33.899.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.599.7GSM133750Turner_A-4-Turne-Mut-Base2_SLDGSE5729Role of COV in vascular patterningLink to GEO
31.499.7GSM131659ATGE_28_B2GSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
31.399.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.199.7GSM133753Turner_A-7-Turne-WT-Base1_SLDGSE5729Role of COV in vascular patterningLink to GEO
25.599.7GSM131660ATGE_28_C2GSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
23.799.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.199.6GSM133749Turner_A-3-Turne-Mut-Base1_SLDGSE5729Role of COV in vascular patterningLink to GEO
21.299.6GSM131658ATGE_28_A2GSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
21.099.6E-MEXP-807-raw-cel-1173273170
19.699.6E-MEXP-1451-raw-cel-1585200362
18.799.5E-MEXP-807-raw-cel-1173273060
18.499.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.599.5E-MEXP-807-raw-cel-1173273116
17.499.5GSM183516MYB51_OE_rep1GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
17.099.5GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
15.999.5GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
15.899.5GSM27362WT StemGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
14.799.4GSM260955A2-LLOYD-PHO_REP2GSE10326Transcriptome analysis of pho3Link to GEO
14.499.4GSM27366lec1-1 StemGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
14.399.4E-MEXP-807-raw-cel-1173273223
14.199.4GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.899.4E-MEXP-807-raw-cel-1173273196
13.799.4GSM131160AtGen_C-10_1-Pi-6_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
13.299.4GSM131161AtGen_C-11_2-Pi-6_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
12.999.3E-MEXP-807-raw-cel-1173273088
12.299.3GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
11.899.3GSM39195RRE1_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
11.399.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.099.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.899.2GSM142637MC002_ATH1_A5.3-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.599.2GSM142645MC002_ATH1_A8.2-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.399.2GSM142648MC002_ATH1_A9.2-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.399.2GSM128786Somerville_1-9_stem-GC8_Rep2_ATH1GSE5533Tissue Type Arrays of Columbia-0Link to GEO
10.199.2GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
9.899.1GSM48126Col_CSC2GSE2538Chitin Oligomer ExperimentLink to GEO
9.699.1GSM48127Col_CSC3GSE2538Chitin Oligomer ExperimentLink to GEO
9.699.1GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.499.1E-MEXP-1094-raw-cel-1379507273
9.399.1GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.299.1GSM39198RRE1_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
9.199.1GSM142635MC002_ATH1_A5.1-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.199.1GSM48124Col_8mer3GSE2538Chitin Oligomer ExperimentLink to GEO
8.999.0GSM39205Col_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
8.999.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
8.699.0GSM48125Col_CSC1GSE2538Chitin Oligomer ExperimentLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0441GO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.Link to AmiGO
0.0361GO:0009860Growth of pollen via tip extension of the intine wall.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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