Co-expression analysis

Gene ID At4g33600
Gene name unknown protein
Module size 11 genes
NF 0.94
%ile 99.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g33600829500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOBO.I.H.G.S.X.
1.00100.00.86At1g68510843180LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)F:unknown;P:biological_process unknown;C:unknown;PFO.I.H.G.S.X.
0.9597.00.93At1g50650841487stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOMO.I.H.G.S.X.
0.9597.00.91At1g71120843452GLIP6Contains lipase signature motif and GDSL domain.O.I.H.G.S.X.
0.9597.00.83At1g71250843466GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.H.G.S.X.
0.9597.00.82At3g58740825043CSY1 (CITRATE SYNTHASE 1)Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.O.I.H.G.S.X.
0.9095.10.80At1g043808395352-oxoglutarate-dependent dioxygenase, putativeencodes a protein similar to a 2-oxoglutarate-dependent dioxygenaseO.I.H.G.S.X.
0.9095.10.82At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.O.I.H.G.S.X.
0.9095.10.88At4g33330829469transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVOO.I.H.G.S.X.
0.9095.10.88At5g12460831121-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMOO.I.H.G.S.X.
0.8994.60.91At5g03810831715carboxylesterase/ hydrolase, acting on ester bonds / lipaseF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.499.8E-ATMX-31-raw-cel-1516947882
29.999.7E-ATMX-31-raw-cel-1516947899
27.299.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.999.7E-ATMX-31-raw-cel-1516947916
23.499.6E-MEXP-285-raw-cel-440782725
21.899.6E-MEXP-285-raw-cel-440782791
19.899.6E-MEXP-1138-raw-cel-1432772746
16.999.5GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
16.899.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.799.5E-MEXP-1138-raw-cel-1432772874
16.599.5GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
16.499.5E-MEXP-1138-raw-cel-1432772714
15.599.5E-MEXP-1138-raw-cel-1432772810
15.199.4E-MEXP-1138-raw-cel-1432772842
14.099.4E-MEXP-1138-raw-cel-1432772778
13.999.4E-MEXP-1138-raw-cel-1432772906
13.899.4E-MEXP-1797-raw-cel-1669768057
13.699.4E-MEXP-1138-raw-cel-1432772522
13.199.4E-MEXP-1138-raw-cel-1432772586
12.999.3E-MEXP-1797-raw-cel-1669767976
12.899.3E-MEXP-1138-raw-cel-1432772554
12.599.3GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.299.3GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.299.3GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.199.3E-MEXP-1797-raw-cel-1669768048
11.999.3GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.699.3GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.599.3E-MEXP-1138-raw-cel-1432772650
11.599.3E-MEXP-1138-raw-cel-1432773002
11.499.3E-MEXP-1138-raw-cel-1432772618
11.399.3E-MEXP-1797-raw-cel-1669768021
11.399.3GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.399.3GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.199.2E-MEXP-1797-raw-cel-1669767958
10.999.2GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.799.2E-TABM-63-raw-cel-681137087
10.599.2E-MEXP-1138-raw-cel-1432773098
10.599.2GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.599.2E-MEXP-1138-raw-cel-1432773130
10.499.2GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.299.2GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.299.2GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.199.2E-MEXP-1797-raw-cel-1669767949
10.199.2GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.099.2GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.999.1GSM133400Knight_2-3_sfr6-lt_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
9.899.1GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.799.1E-MEXP-1138-raw-cel-1432772682
9.699.1E-MEXP-1797-raw-cel-1669768003
9.599.1GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.499.1E-MEXP-1797-raw-cel-1669768075
9.499.1GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.499.1E-TABM-63-raw-cel-681137160
9.399.1E-MEXP-1138-raw-cel-1432773226
9.399.1E-MEXP-1138-raw-cel-1432773162
9.399.1GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.399.1GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.299.1GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.099.1GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.099.1GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
8.999.0GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.799.0GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1251GO:0007047A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.Link to AmiGO
0.1111GO:0044262The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells.Link to AmiGO
0.0711GO:0006099A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.047100630Glyoxylate and dicarboxylate metabolismLink to KEGG PATHWAY
0.028100020Citrate cycle (TCA cycle)Link to KEGG PATHWAY
0.012101066Biosynthesis of alkaloids derived from terpenoid and polyketideLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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