CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g32551

Gene name LUG (LEUNIG)

Module size 39 genes

NF 0.48

%ile 68.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.74 86.1 1.00 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. O.I. H.G. S.X.
0.74 86.1 0.95 At1g80930 844433 MIF4G domain-containing protein / MA3 domain-containing protein F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVA O.I. H.G. S.X.
0.67 81.6 0.94 At4g17330 827445 ATG2484-1 gene of unknown function expressed in seedlings, flower buds and stems O.I. H.G. S.X.
0.67 81.6 0.94 At5g51300 835204 splicing factor-related F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:RNA splicing;C:unknown;MFPOBVA O.I. H.G. S.X.
0.66 80.1 0.94 At2g36720 818244 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. H.G. S.X.
0.59 74.7 0.94 At1g26170 839158 binding / protein transporter F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPO O.I. H.G. S.X.
0.58 73.8 0.94 At1g27595 839651 - F:unknown;P:unknown;C:unknown;OMFPB O.I. H.G. S.X.
0.57 73.8 0.94 At4g32620 829397 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFB O.I. H.G. S.X.
0.55 70.6 0.94 At4g39680 830123 SAP domain-containing protein F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA O.I. H.G. S.X.
0.54 69.5 0.94 At5g15680 831422 binding F:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPO O.I. H.G. S.X.
0.54 69.5 0.93 At2g38440 818425 SCAR2 (SCAR HOMOLOG 2) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. O.I. H.G. S.X.
0.53 68.6 0.94 At2g05230 815071 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV O.I. H.G. S.X.
0.52 67.4 0.94 At3g26560 822264 ATP-dependent RNA helicase, putative F:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVA O.I. H.G. S.X.
0.52 67.4 0.93 At1g79730 844312 ELF7 (EARLY FLOWERING 7) Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. O.I. H.G. S.X.
0.51 66.3 0.93 At1g50200 841442 ALATS (ALANYL-TRNA SYNTHETASE) F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFP O.I. H.G. S.X.
0.51 66.3 0.93 At5g48120 834864 binding F:binding;P:unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.49 63.5 0.94 At1g02080 839244 transcriptional regulator-related F:transcription regulator activity;P:unknown;C:membrane;MOFBP O.I. H.G. S.X.
0.48 62.5 0.93 At1g20960 838690 emb1507 (embryo defective 1507) F:in 6 functions;P:embryonic development ending in seed dormancy;C:nucleolus, membrane;OBMFAPV O.I. H.G. S.X.
0.48 62.5 0.93 At4g34430 829594 CHB3 Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002). O.I. H.G. S.X.
0.48 62.5 0.94 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA O.I. H.G. S.X.
0.47 61.2 0.94 At5g38880 833879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA O.I. H.G. S.X.
0.47 61.2 0.94 At2g16940 816197 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MOFPBVA O.I. H.G. S.X.
0.47 61.2 0.93 At5g58100 835922 unknown protein F:unknown;P:pollen exine formation;C:unknown;POAB O.I. H.G. S.X.
0.47 61.2 0.93 At2g46560 819268 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOP O.I. H.G. S.X.
0.46 59.8 0.94 At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.45 58.3 0.93 At3g15120 820743 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.42 53.9 0.93 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. H.G. S.X.
0.41 52.4 0.93 At5g64270 836548 splicing factor, putative F:binding;P:mRNA processing;C:chloroplast;MFOBPAV O.I. H.G. S.X.
0.41 52.4 0.94 At4g00830 827998 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.41 52.4 0.93 At5g06120 830499 Ran-binding protein, putative F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP O.I. H.G. S.X.
0.40 50.8 0.94 At1g12930 837851 importin-related F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.39 48.4 0.93 At4g05420 825890 DDB1A (DAMAGED DNA BINDING PROTEIN 1A) Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. O.I. H.G. S.X.
0.38 46.7 0.93 At1g55325 841978 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF O.I. H.G. S.X.
0.38 46.7 0.94 At5g27970 832867 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. H.G. S.X.
0.37 45.0 0.94 At4g30890 829213 UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) Encodes a ubiquitin-specific protease. O.I. H.G. S.X.
0.37 45.0 0.94 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. O.I. H.G. S.X.
0.37 45.0 0.93 At3g13290 820529 VCR (VARICOSE-RELATED) F:nucleotide binding;P:unknown;C:cellular_component unknown;MBOFPA O.I. H.G. S.X.
0.35 41.6 0.94 At1g54610 841903 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA O.I. H.G. S.X.
0.29 30.3 0.93 At3g13670 820572 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.74	86.1	1.00	At4g32551	829390	LUG (LEUNIG)	LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.	O.I.	H.G.	S.X.
0.74	86.1	0.95	At1g80930	844433	MIF4G domain-containing protein / MA3 domain-containing protein	F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVA	O.I.	H.G.	S.X.
0.67	81.6	0.94	At4g17330	827445	ATG2484-1	gene of unknown function expressed in seedlings, flower buds and stems	O.I.	H.G.	S.X.
0.67	81.6	0.94	At5g51300	835204	splicing factor-related	F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:RNA splicing;C:unknown;MFPOBVA	O.I.	H.G.	S.X.
0.66	80.1	0.94	At2g36720	818244	PHD finger transcription factor, putative	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.59	74.7	0.94	At1g26170	839158	binding / protein transporter	F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPO	O.I.	H.G.	S.X.
0.58	73.8	0.94	At1g27595	839651	-	F:unknown;P:unknown;C:unknown;OMFPB	O.I.	H.G.	S.X.
0.57	73.8	0.94	At4g32620	829397	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFB	O.I.	H.G.	S.X.
0.55	70.6	0.94	At4g39680	830123	SAP domain-containing protein	F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA	O.I.	H.G.	S.X.
0.54	69.5	0.94	At5g15680	831422	binding	F:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPO	O.I.	H.G.	S.X.
0.54	69.5	0.93	At2g38440	818425	SCAR2 (SCAR HOMOLOG 2)	Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.	O.I.	H.G.	S.X.
0.53	68.6	0.94	At2g05230	815071	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV	O.I.	H.G.	S.X.
0.52	67.4	0.94	At3g26560	822264	ATP-dependent RNA helicase, putative	F:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVA	O.I.	H.G.	S.X.
0.52	67.4	0.93	At1g79730	844312	ELF7 (EARLY FLOWERING 7)	Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.	O.I.	H.G.	S.X.
0.51	66.3	0.93	At1g50200	841442	ALATS (ALANYL-TRNA SYNTHETASE)	F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFP	O.I.	H.G.	S.X.
0.51	66.3	0.93	At5g48120	834864	binding	F:binding;P:unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.49	63.5	0.94	At1g02080	839244	transcriptional regulator-related	F:transcription regulator activity;P:unknown;C:membrane;MOFBP	O.I.	H.G.	S.X.
0.48	62.5	0.93	At1g20960	838690	emb1507 (embryo defective 1507)	F:in 6 functions;P:embryonic development ending in seed dormancy;C:nucleolus, membrane;OBMFAPV	O.I.	H.G.	S.X.
0.48	62.5	0.93	At4g34430	829594	CHB3	Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).	O.I.	H.G.	S.X.
0.48	62.5	0.94	At2g25760	817118	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA	O.I.	H.G.	S.X.
0.47	61.2	0.94	At5g38880	833879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA	O.I.	H.G.	S.X.
0.47	61.2	0.94	At2g16940	816197	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MOFPBVA	O.I.	H.G.	S.X.
0.47	61.2	0.93	At5g58100	835922	unknown protein	F:unknown;P:pollen exine formation;C:unknown;POAB	O.I.	H.G.	S.X.
0.47	61.2	0.93	At2g46560	819268	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOP	O.I.	H.G.	S.X.
0.46	59.8	0.94	At1g09730	837501	Ulp1 protease family protein	F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA	O.I.	H.G.	S.X.
0.45	58.3	0.93	At3g15120	820743	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV	O.I.	H.G.	S.X.
0.42	53.9	0.93	At5g51340	835208	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	H.G.	S.X.
0.41	52.4	0.93	At5g64270	836548	splicing factor, putative	F:binding;P:mRNA processing;C:chloroplast;MFOBPAV	O.I.	H.G.	S.X.
0.41	52.4	0.94	At4g00830	827998	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	H.G.	S.X.
0.41	52.4	0.93	At5g06120	830499	Ran-binding protein, putative	F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP	O.I.	H.G.	S.X.
0.40	50.8	0.94	At1g12930	837851	importin-related	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.39	48.4	0.93	At4g05420	825890	DDB1A (DAMAGED DNA BINDING PROTEIN 1A)	Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.	O.I.	H.G.	S.X.
0.38	46.7	0.93	At1g55325	841978	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF	O.I.	H.G.	S.X.
0.38	46.7	0.94	At5g27970	832867	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	H.G.	S.X.
0.37	45.0	0.94	At4g30890	829213	UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)	Encodes a ubiquitin-specific protease.	O.I.	H.G.	S.X.
0.37	45.0	0.94	At3g22170	821781	FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)	A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.	O.I.	H.G.	S.X.
0.37	45.0	0.93	At3g13290	820529	VCR (VARICOSE-RELATED)	F:nucleotide binding;P:unknown;C:cellular_component unknown;MBOFPA	O.I.	H.G.	S.X.
0.35	41.6	0.94	At1g54610	841903	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA	O.I.	H.G.	S.X.
0.29	30.3	0.93	At3g13670	820572	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
67.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.1 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
62.1 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.5 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.3 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
61.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.5 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
58.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.3 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.8 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.6 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.1 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.3 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.8 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.1 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.8 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.3 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.7 99.6 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.5 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.5 99.5 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.8 99.5 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.2 99.4 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.3 99.4 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.6 99.3 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.5 99.3 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.1 99.3 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3 99.3 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.9 99.1 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.8 99.1 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
9.3 99.1 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
9.1 99.1 GSM10483 lec1-1 Post-Mature Green Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
67.8	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.1	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
62.1	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.5	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.3	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
61.1	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.5	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
58.3	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.3	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
54.8	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
54.6	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
54.1	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.3	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.8	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
50.8	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.1	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.8	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
27.3	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.7	99.6	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.5	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.5	99.5	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.8	99.5	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.2	99.4	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.3	99.4	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.6	99.3	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.5	99.3	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.1	99.3	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3	99.3	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.9	99.1	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.8	99.1	GSM10456	WT Post-Mature Green Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
9.3	99.1	GSM10454	WT Post-Mature Green Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
9.1	99.1	GSM10483	lec1-1 Post-Mature Green Seed 1	GSE1051	Seed development in LEAFY COTYLEDON1 mutants

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 2 GO:0000059 The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins.
0.063 2 GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
0.055 2 GO:0016481 Any process that stops, prevents or reduces the frequency, rate or extent of transcription.

SF	Genes	GO ID	Process Name
0.074	2	GO:0000059	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins.
0.063	2	GO:0006397	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
0.055	2	GO:0016481	Any process that stops, prevents or reduces the frequency, rate or extent of transcription.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.023 1 00970 Aminoacyl-tRNA biosynthesis
0.023 1 03018 RNA degradation
0.022 1 03420 Nucleotide excision repair

SF	Genes	KEGG ID	Pathway name
0.023	1	00970	Aminoacyl-tRNA biosynthesis
0.023	1	03018	RNA degradation
0.022	1	03420	Nucleotide excision repair

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At4g32551
Gene name	LUG (LEUNIG)
Module size	39 genes
NF	0.48
%ile	68.2

Co-expression analysis

Gene ID At4g32551 Gene name LUG (LEUNIG) Module size 39 genes NF 0.48 %ile 68.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.023100970Aminoacyl-tRNA biosynthesis0.023103018RNA degradation0.022103420Nucleotide excision repair

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At4g32551

Gene name LUG (LEUNIG)

Module size 39 genes

NF 0.48

%ile 68.2

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.023 1 00970 Aminoacyl-tRNA biosynthesis
0.023 1 03018 RNA degradation
0.022 1 03420 Nucleotide excision repair

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays