Co-expression analysis

Gene ID At4g31580
Gene name SRZ-22
Module size 74 genes
NF 0.36
%ile 48.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g31580829285SRZ-22Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.O.I.H.G.S.X.
0.5673.00.93At1g77440844080PBC2Encodes beta subunit of 20s proteosome complex which is involved in protein degradation.O.I.H.G.S.X.
0.5368.60.93At2g19080816425metaxin-relatedF:molecular_function unknown;P:protein targeting to mitochondrion;C:mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, plastid;MBPFOO.I.H.G.S.X.
0.5368.60.94At3g02520821060GRF7 (GENERAL REGULATORY FACTOR 7)Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν).O.I.H.G.S.X.
0.5065.30.94At5g11170830986ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:response to cadmium ion;C:nucleolus;BOMFPAVO.I.H.G.S.X.
0.4963.50.93At1g20200838609EMB2719 (EMBRYO DEFECTIVE 2719)F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPOO.I.H.G.S.X.
0.4963.50.93At5g09900830850EMB2107 (EMBRYO DEFECTIVE 2107)Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.O.I.H.G.S.X.
0.4862.50.93At5g05780830463RPN8A (RP NON-ATPASE SUBUNIT 8A)Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity.O.I.H.G.S.X.
0.4457.20.92At1g09150837434pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;MOFAPO.I.H.G.S.X.
0.4457.20.93At3g10220820184tubulin folding cofactor BF:molecular_function unknown;P:tubulin complex assembly;C:nucleus, phragmoplast, cytoplasm;MFOPO.I.H.G.S.X.
0.4457.20.93At5g02530831923RNA and export factor-binding protein, putativeF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVAO.I.H.G.S.X.
0.4355.30.92At3g02200821267proteasome family proteinF:molecular_function unknown;P:unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.4355.30.92At1g70190843355ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:mitochondrion, large ribosomal subunit;BOPMFO.I.H.G.S.X.
0.4355.30.93At5g43960834419nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MPFOBVAO.I.H.G.S.X.
0.4355.30.93At3g27430822364PBB1Encodes 20S proteasome beta subunit PBB1 (PBB1).O.I.H.G.S.X.
0.4355.30.92At4g2482082858526S proteasome regulatory subunit, putative (RPN7)F:molecular_function unknown;P:protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane;MFPOO.I.H.G.S.X.
0.4355.30.93At4g28440828961DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PAOO.I.H.G.S.X.
0.4253.90.93At1g50370841459serine/threonine protein phosphatase, putativeF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.H.G.S.X.
0.4253.90.94At5g64200836541ATSC35encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.O.I.H.G.S.X.
0.4253.90.93At4g25550828660protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.4253.90.93At5g20920832216EIF2 BETAprotein synthesis initiation factor eIF2 betaO.I.H.G.S.X.
0.4253.90.92At3g49420824104Got1-like family proteinF:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.4152.40.92At1g65270842834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOO.I.H.G.S.X.
0.4152.40.92At5g13780831223GCN5-related N-acetyltransferase, putativeF:N-acetyltransferase activity;P:metabolic process;C:endomembrane system;MOFBAPO.I.H.G.S.X.
0.4152.40.92At4g38630830019RPN10 (REGULATORY PARTICLE NON-ATPASE 10)Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilitiesO.I.H.G.S.X.
0.4152.40.92At4g01320828209ATSTE24CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.O.I.H.G.S.X.
0.4050.80.93At3g60820825253PBF1Encodes 20S proteasome beta subunit PBF1 (PBF1).O.I.H.G.S.X.
0.4050.80.93At4g32390829374phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.4050.80.93At5g4562083460226S proteasome regulatory subunit, putative (RPN9)F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:proteasome regulatory particle, lid subcomplex;MFOPO.I.H.G.S.X.
0.3948.40.92At2g20420816561succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putativeF:succinate-CoA ligase (GDP-forming) activity, ATP binding;P:response to cadmium ion, metabolic process;C:mitochondrion;OBMFAPO.I.H.G.S.X.
0.3948.40.93At3g56110824777PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOO.I.H.G.S.X.
0.3948.40.93At3g12130820388KH domain-containing protein / zinc finger (CCCH type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MPOFBO.I.H.G.S.X.
0.3846.70.92At1g21720838776PBC1 (PROTEASOME BETA SUBUNIT C1)20S proteasome beta subunit PBC1 truncated protein (PBC1)O.I.H.G.S.X.
0.3846.70.92At5g36230833620eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOVO.I.H.G.S.X.
0.3846.70.92At1g79650844304RAD23putative DNA repair protein RAD23O.I.H.G.S.X.
0.3745.00.92At5g38470833835DNA repair protein RAD23, putativeF:damaged DNA binding;P:response to cold, nucleotide-excision repair;C:nucleus;MPOFBVAO.I.H.G.S.X.
0.3745.00.92At3g49430824105SRp34a (Ser/Arg-rich protein 34a)F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVAO.I.H.G.S.X.
0.3745.00.94At5g54430835531universal stress protein (USP) family proteinContains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.O.I.H.G.S.X.
0.3643.60.93At1g30580839938GTP bindingF:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAPO.I.H.G.S.X.
0.3643.60.93At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPO.I.H.G.S.X.
0.3643.60.93At4g39880830147ribosomal protein L23 family proteinF:structural constituent of ribosome, nucleotide binding;P:translation, ribosome biogenesis;C:ribosome;BOPMO.I.H.G.S.X.
0.3643.60.92At5g49510835011PDF3 (PREFOLDIN 3)F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPO.I.H.G.S.X.
0.3541.60.92At3g09890820147ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.3541.60.93At4g33250829461EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)Encodes initiation factor 3k (EIF3k).O.I.H.G.S.X.
0.3541.60.92At4g12590826872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOPO.I.H.G.S.X.
0.3439.80.92At3g20970821647NFU4Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.O.I.H.G.S.X.
0.3439.80.92At5g23140832378NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).O.I.H.G.S.X.
0.3338.10.93At4g21150827863HAP6 (HAPLESS 6)F:dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid terminal N-glycosylation, response to cold;C:in 6 components;MFPOO.I.H.G.S.X.
0.3338.10.92At1g51980841627mitochondrial processing peptidase alpha subunit, putativeF:metalloendopeptidase activity, ATP binding;P:proteolysis, response to salt stress;C:in 6 components;BOMFPAVO.I.H.G.S.X.
0.3235.70.93At1g04170839238EIF2 GAMMAprotein synthesis initiation factor eIF2 gammaO.I.H.G.S.X.
0.3235.70.92At2g25970817137KH domain-containing proteinF:RNA binding, nucleic acid binding;P:unknown;C:unknown;MBFOPVAO.I.H.G.S.X.
0.3235.70.93At4g18040827529EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.O.I.H.G.S.X.
0.3235.70.92At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPO.I.H.G.S.X.
0.3133.80.92At5g55940835692emb2731 (embryo defective 2731)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endoplasmic reticulum;MOPFO.I.H.G.S.X.
0.3133.80.93At5g04280830307glycine-rich RNA-binding proteinF:RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBVAO.I.H.G.S.X.
0.3032.10.93At5g27540832814MIRO1 (Miro-related GTP-ase 1)Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.O.I.H.G.S.X.
0.3032.10.92At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.3032.10.92At2g44065819012ribosomal protein L2 family proteinF:structural constituent of ribosome, RNA binding, transferase activity;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAFO.I.H.G.S.X.
0.3032.10.92At3g19980821536ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.O.I.H.G.S.X.
0.2930.30.92At1g20050838593HYD1 (HYDRA1)C-8 sterol isomeraseO.I.H.G.S.X.
0.2930.30.92At1g04510839503transducin family protein / WD-40 repeat family proteinF:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.2830.30.93At3g61240825296DEAD/DEAH box helicase, putative (RH12)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:unknown;OBMFPAVO.I.H.G.S.X.
0.2830.30.92At4g24490828551protein prenyltransferaseF:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAVO.I.H.G.S.X.
0.2624.40.92At5g63400836459ADK1 (ADENYLATE KINASE 1)encodes a protein similar to adenylate kinase.O.I.H.G.S.X.
0.2624.40.93At2g39990818587EIF2translation initiation factor eIF2 p47 subunit homologO.I.H.G.S.X.
0.2624.40.92At1g55900842040TIM50component of a translocase in the mitochondrial inner membraneO.I.H.G.S.X.
0.2624.40.92At5g13450831186ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPFO.I.H.G.S.X.
0.2522.60.92At3g05530819718RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.O.I.H.G.S.X.
0.2319.30.93At1g55150841958DEAD box RNA helicase, putative (RH20)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2319.30.92At3g01280820914VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.S.X.
0.2217.50.92At4g30890829213UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.2217.50.92At1g22450838851COX6B (CYTOCHROME C OXIDASE 6B)subunit 6b of cytochrome c oxidaseO.I.H.G.S.X.
0.2014.40.92At5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.O.I.H.G.S.X.
0.168.80.92At5g35430833507bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.499.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
50.199.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.899.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.399.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
49.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.099.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.999.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.199.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.199.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.599.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.099.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.599.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.099.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
21.299.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.299.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.899.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.299.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.999.5E-MEXP-509-raw-cel-829148703
10.899.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0554GO:0006413The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.Link to AmiGO
0.0533GO:0008380The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.Link to AmiGO
0.0492GO:0043161The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.1671103050ProteasomeLink to KEGG PATHWAY
0.033203018RNA degradationLink to KEGG PATHWAY
0.032203420Nucleotide excision repairLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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