Co-expression analysis

Gene ID At4g30450
Gene name glycine-rich protein
Module size 5 genes
NF 0.46
%ile 65.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.6176.71.00At4g30450829168glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVAO.I.H.G.S.X.
1.00100.00.82At3g53980824565protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.6781.60.80At4g30460829169glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.H.G.S.X.
0.3541.60.79At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.2726.20.78At1g18880838469proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
101.099.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
60.599.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
52.099.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.199.8GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
48.399.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.499.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.199.8E-MEXP-265-raw-cel-414617695
40.599.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7E-ATMX-35-raw-cel-1574334880
37.299.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.199.7GSM131453AtGen_6-9321_Heatstress-Roots-3.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
35.299.7E-MEXP-265-raw-cel-414617783
34.699.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.299.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.299.7GSM131454AtGen_6-9322_Heatstress-Roots-3.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
32.899.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.799.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.299.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.599.7GSM131449AtGen_6-9221_Heatstress-Roots-1.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
30.499.7E-ATMX-35-raw-cel-1574334864
29.899.7GSM131452AtGen_6-9312_Heatstress-Shoots-3.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
29.199.7GSM131451AtGen_6-9311_Heatstress-Shoots-3.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
28.899.7GSM131447AtGen_6-9211_Heatstress-Shoots-1.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
28.599.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.199.7E-MEXP-265-raw-cel-414617890
27.099.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
26.699.7GSM131450AtGen_6-9222_Heatstress-Roots-1.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
25.699.7E-ATMX-35-raw-cel-1574334848
25.599.7E-MEXP-285-raw-cel-440782725
25.299.6GSM131448AtGen_6-9212_Heatstress-Shoots-1.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
24.999.6E-MEXP-285-raw-cel-440782791
22.299.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.399.6GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
21.199.6GSM133719Deeken_A-1-Deeke-Tum_SLD_REP1GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
20.499.6GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
19.899.6E-MEXP-1138-raw-cel-1432772522
18.199.5E-MEXP-1138-raw-cel-1432772682
17.999.5GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
17.899.5E-MEXP-98-raw-cel-320188969
16.899.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.399.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.399.5E-MEXP-1138-raw-cel-1432772746
16.299.5E-MEXP-1138-raw-cel-1432773130
16.099.5E-MEXP-1138-raw-cel-1432772874
15.999.5GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
15.899.5E-MEXP-1138-raw-cel-1432772906
15.599.5E-MEXP-1138-raw-cel-1432772586
15.499.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.499.5E-MEXP-1138-raw-cel-1432772650
15.399.4E-MEXP-1138-raw-cel-1432772714
15.299.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.999.4E-MEXP-1138-raw-cel-1432772938
14.599.4E-MEXP-1138-raw-cel-1432772970
14.599.4E-MEXP-1138-raw-cel-1432772842
14.499.4E-MEXP-1138-raw-cel-1432772810
14.399.4E-MEXP-1138-raw-cel-1432772554
14.099.4E-MEXP-1138-raw-cel-1432772618
13.899.4E-MEXP-1138-raw-cel-1432773098
13.899.4GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
13.699.4E-MEXP-98-raw-cel-320188914
13.599.4E-MEXP-1138-raw-cel-1432772778
13.399.4E-MEXP-1138-raw-cel-1432773002
12.899.3E-MEXP-1725-raw-cel-1669614634
12.899.3E-MEXP-1138-raw-cel-1432773034
12.399.3E-MEXP-1725-raw-cel-1669614623
12.399.3E-MEXP-1138-raw-cel-1432773066
12.299.3E-MEXP-1299-raw-cel-1519902558
11.799.3GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.699.3E-MEXP-1138-raw-cel-1432773354
11.599.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.499.3E-MEXP-1138-raw-cel-1432773194
11.399.3E-MEXP-1138-raw-cel-1432773226
11.399.3E-MEXP-1138-raw-cel-1432773162
10.999.2E-MEXP-1725-raw-cel-1669614582
10.899.2GSM133135S1500_24H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
10.899.2GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
10.799.2E-MEXP-1138-raw-cel-1432773322
10.599.2GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.899.1GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.899.1GSM134202Murray_3-1_D1-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
9.899.1E-MEXP-1299-raw-cel-1519903496
9.699.1GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.699.1E-MEXP-1138-raw-cel-1432773290
9.599.1E-MEXP-1725-raw-cel-1669614562
9.499.1GSM133121S0_12H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
8.899.0GSM133122S0_12H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
8.799.0E-MEXP-1138-raw-cel-1432773386

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0322GO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.Link to AmiGO
0.0291GO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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