Co-expression analysis

Gene ID At4g30280
Gene name XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)
Module size 41 genes
NF 0.66
%ile 86.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8190.41.00At4g30280829151XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.H.G.S.X.
0.8592.40.80At4g26200828726ACS7Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.O.I.H.G.S.X.
0.7989.10.80At5g66620836794DAR6 (DA1-RELATED PROTEIN 6)F:zinc ion binding;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.7788.00.80At1g51620841587protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.7788.00.78At1g30135839893JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7788.00.81At4g38420829999sks9 (SKU5 Similar 9)F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOAO.I.H.G.S.X.
0.7687.40.76At2g14290815916F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.7687.40.80At1g22810838887AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.H.G.S.X.
0.7586.90.84At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)O.I.H.G.S.X.
0.7486.10.78At4g37770829933ACS8Encodes an auxin inducible ACC synthase.O.I.H.G.S.X.
0.7385.50.79At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.7385.50.80At1g30370839917lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMVO.I.H.G.S.X.
0.7284.80.81At1g14540838016anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.H.G.S.X.
0.7284.80.74At5g66640836796DAR3 (DA1-RELATED PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.H.G.S.X.
0.7083.50.77At1g69930843329ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.H.G.S.X.
0.7083.50.74At5g52050835280MATE efflux protein-relatedF:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.H.G.S.X.
0.7083.50.80At2g37430818319zinc finger (C2H2 type) family protein (ZAT11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOFO.I.H.G.S.X.
0.6982.90.80At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.6982.90.75At2g34600818025JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;PO.I.H.G.S.X.
0.6982.90.76At5g24110832476WRKY30member of WRKY Transcription Factor; Group IIIO.I.H.G.S.X.
0.6882.20.74At2g22760816806basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMAO.I.H.G.S.X.
0.6781.60.77At2g32140817773transmembrane receptorF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBOO.I.H.G.S.X.
0.6680.10.76At1g066208371712-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseO.I.H.G.S.X.
0.6680.10.77At5g42380834244CML37 (CALMODULIN LIKE 37)F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBVO.I.H.G.S.X.
0.6680.10.78At5g51190835193AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.H.G.S.X.
0.6579.60.74At5g67450836881AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.O.I.H.G.S.X.
0.6579.60.77At5g47220834768ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.O.I.H.G.S.X.
0.6478.90.77At1g35210840410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.H.G.S.X.
0.6378.10.77At2g27310817274F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6378.10.77At3g01830820033calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.6176.70.74At2g201422745551transmembrane receptorF:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PO.I.H.G.S.X.
0.6176.70.79At3g50930824257BCS1 (CYTOCHROME BC1 SYNTHESIS)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAVO.I.H.G.S.X.
0.6075.70.77At1g20310838619unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.6075.70.79At5g56980835800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.H.G.S.X.
0.6075.70.81At5g61900836311BON1 (BONZAI 1)Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.O.I.H.G.S.X.
0.5673.00.76At4g28460828963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5570.60.74At5g01560830345LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3)Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.O.I.H.G.S.X.
0.5368.60.79At2g32030817763GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVMO.I.H.G.S.X.
0.5166.30.77At1g63750842679ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein bindingF:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFVAO.I.H.G.S.X.
0.5065.30.78At2g25735817115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4558.30.76At3g08720820019S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
92.199.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
84.199.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
78.499.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
74.699.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
61.299.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
52.899.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
51.699.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
46.799.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.399.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.399.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.899.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.799.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.799.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.599.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.099.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.699.7GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.599.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.499.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.199.6GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
20.399.6GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
18.899.5GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
14.799.4GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.999.3GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.799.3GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
11.599.3GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.999.1GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.299.1GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.899.0GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.899.0GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
8.799.0GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0716GO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.Link to AmiGO
0.0662GO:0009693The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.Link to AmiGO
0.0632GO:0006073The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.019100270Cysteine and methionine metabolismLink to KEGG PATHWAY
0.017100360Phenylalanine metabolismLink to KEGG PATHWAY
0.016100680Methane metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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