Co-expression analysis

Gene ID At4g30130
Gene name unknown protein
Module size 5 genes
NF 0.58
%ile 79.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5570.61.00At4g30130829136unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.7586.90.84At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.H.G.S.X.
0.6075.70.87At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.80.83At3g57920824961SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.O.I.H.G.S.X.
0.4457.20.85At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.O.I.H.G.S.X.Other DB
0.6781.60.87At2g42200818820SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.O.I.H.G.S.X.
0.5773.80.81At3g11000820271-F:unknown;P:unknown;C:endomembrane system;POBFMVO.I.H.G.S.X.
0.5773.80.71At5g47600834810heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.H.G.S.X.
0.5570.60.77At4g34400829590DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVAO.I.H.G.S.X.
0.4761.20.83At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POO.I.H.G.S.X.
0.4659.80.79At5g44620834490CYP706A3member of CYP706AO.I.H.G.S.X.
0.4050.80.82At1g19830838570auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.H.G.S.X.
0.4050.80.80At1g10980837641-F:unknown;P:biological_process unknown;C:vacuole;MFPOO.I.H.G.S.X.
0.4050.80.78At5g03390831852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.4050.80.66At1g01130839359unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3643.60.77At1g53160841749SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.H.G.S.X.
0.3338.10.87At2g32765817837SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.O.I.H.G.S.X.
0.2930.30.73At2g16210816118transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.20.78At1g24070839019ATCSLA10encodes a gene similar to cellulose synthaseO.I.H.G.S.X.
0.2726.20.76At5g20740832197invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2624.40.71At3g2850082248060S acidic ribosomal protein P2 (RPP2C)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPABO.I.H.G.S.X.

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
69.799.9E-MEXP-1725-raw-cel-1669614634
62.899.8E-MEXP-98-raw-cel-320188749
39.699.8E-MEXP-98-raw-cel-320188694
37.199.7E-MEXP-1725-raw-cel-1669614623
27.199.7E-MEXP-98-raw-cel-320188969
20.699.6E-MEXP-1725-raw-cel-1669614562
13.399.4E-ATMX-33-raw-cel-1562596197
12.599.3GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.899.3E-MEXP-98-raw-cel-320188914
11.099.2E-MEXP-1443-raw-cel-1581869745
10.699.2E-ATMX-33-raw-cel-1562596103
9.899.1E-MEXP-1725-raw-cel-1669614582
9.199.1GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO
8.999.0E-ATMX-33-raw-cel-1562596241

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0008361Any process that modulates the size of a cell.Link to AmiGO
0.1181GO:0007389Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.Link to AmiGO
0.1111GO:0042127Any process that modulates the frequency, rate or extent of cell proliferation.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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