Co-expression analysis

Gene ID At4g30130
Gene name unknown protein
Module size 5 genes
NF 0.58
%ile 79.4

Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5570.61.00At4g30130829136unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.7586.90.84At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.H.G.S.X.
0.6075.70.87At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.80.83At3g57920824961SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.O.I.H.G.S.X.
0.4457.20.85At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.599.3GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.199.1GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0008361Any process that modulates the size of a cell.Link to AmiGO
0.1181GO:0007389Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.Link to AmiGO
0.1111GO:0042127Any process that modulates the frequency, rate or extent of cell proliferation.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

A co-expression module including the maize gene, Zm.3788.1.S1_at, orthologous to the query gene, At4g30130

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9299.2Zm.3788.1.S1_at---3e-1At5g43200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3742.3Zm.1309.1.S1_at-hypothetical protein LOC100278261-2e-1At1g61450unknown proteinO.I.H.G.S.X.
0.2318.6Zm.16481.1.S1_at---5e+0At5g59780MYB59 (MYB DOMAIN PROTEIN 59)O.I.H.G.S.X.
0.2014.2Zm.107.1.S1_at-glutamine synthetase2-2e-17At3g17820ATGSKB6O.I.H.G.S.X.
0.1912.8Zm.5600.2.A1_a_at-thioredoxin H-type 5-2e+0At1g19050ARR7 (RESPONSE REGULATOR 7)O.I.H.G.S.X.
0.136.8ZmAffx.7.1.S1_at-monosaccharide transport protein 1-4e-9At1g50310STP9 (SUGAR TRANSPORTER 9)O.I.H.G.S.X.
0.125.9Zm.13112.2.A1_at---2e-7At5g63420emb2746 (embryo defective 2746)O.I.H.G.S.X.
0.083.4Zm.16243.1.S1_at-catalytic/ hydrolase-2e-1At3g52620unknown proteinO.I.H.G.S.X.
0.072.9Zm.7091.2.S1_a_at-chlorophyll a/b-binding apoprotein CP24 precursor-2e-15At1g15820LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)O.I.H.G.S.X.
0.062.3Zm.18488.1.A1_at-hypothetical protein LOC100191265-7e+0At3g57540remorin family proteinO.I.H.G.S.X.
0.031.1Zm.10409.1.A1_at---2e+0At3g23165LCR42 (Low-molecular-weight cysteine-rich 42)O.I.H.G.S.X.
0.031.1Zm.5670.1.A1_at-delta-7-sterol-C5-8e-13At3g02580STE1 (STEROL 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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