CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g30130

Gene name unknown protein

Module size 5 genes

NF 0.58

%ile 79.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.55 70.6 1.00 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.75 86.9 0.84 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. H.G. S.X.
0.60 75.7 0.87 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. H.G. S.X.
0.57 73.8 0.83 At3g57920 824961 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. O.I. H.G. S.X.
0.44 57.2 0.85 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
69.7 99.9 E-MEXP-1725-raw-cel-1669614634
62.8 99.8 E-MEXP-98-raw-cel-320188749
39.6 99.8 E-MEXP-98-raw-cel-320188694
37.1 99.7 E-MEXP-1725-raw-cel-1669614623
27.1 99.7 E-MEXP-98-raw-cel-320188969
20.6 99.6 E-MEXP-1725-raw-cel-1669614562
13.3 99.4 E-ATMX-33-raw-cel-1562596197
12.5 99.3 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
11.8 99.3 E-MEXP-98-raw-cel-320188914
11.0 99.2 E-MEXP-1443-raw-cel-1581869745
10.6 99.2 E-ATMX-33-raw-cel-1562596103
9.8 99.1 E-MEXP-1725-raw-cel-1669614582
9.1 99.1 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
8.9 99.0 E-ATMX-33-raw-cel-1562596241

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0008361 Any process that modulates the size of a cell.
0.118 1 GO:0007389 Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
0.111 1 GO:0042127 Any process that modulates the frequency, rate or extent of cell proliferation.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C69000064_at, orthologous to the query gene, At4g30130

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 PsAffx.C69000064_at - - - 1e-1 At4g05553 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.14 17.5 HgAffx.19372.1.S1_at - - - 2e-1 At2g33655 F-box family protein O.I. H.G. S.X.
0.11 14.2 PsAffx.C6000181_at - - - 4e+0 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.
0.06 9.0 GmaAffx.33932.1.S1_at - - - 8e-1 At1g30890 integral membrane HRF1 family protein O.I. H.G. S.X.
0.01 3.4 HgAffx.18004.1.S1_at - - - 2e+0 At4g13000 protein kinase family protein O.I. H.G. S.X.
0.00 1.4 GmaAffx.99.2.A1_s_at - Translationally controlled tumor-like protein - 3e-1 At3g26670 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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