CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g27652

Gene name unknown protein

Module size 28 genes

NF 0.54

%ile 75.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.58 73.8 1.00 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.74 86.1 0.76 At1g74450 843786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.72 84.8 0.85 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.70 83.5 0.71 At1g74930 843832 ORA47 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. H.G. S.X.
0.69 82.9 0.75 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF O.I. H.G. S.X.
0.66 80.1 0.71 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.65 79.6 0.77 At1g27730 839666 STZ (salt tolerance zinc finger) Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress. O.I. H.G. S.X.
0.62 77.3 0.78 At1g18740 838456 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PA O.I. H.G. S.X.
0.62 77.3 0.72 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. O.I. H.G. S.X.
0.60 75.7 0.69 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. H.G. S.X.
0.58 73.8 0.69 At3g28340 822462 GATL10 (Galacturonosyltransferase-like 10) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.56 73.0 0.62 At5g45340 834570 CYP707A3 Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor). O.I. H.G. S.X.
0.55 70.6 0.70 At5g59550 836074 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. H.G. S.X.
0.54 69.5 0.64 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. H.G. S.X.
0.53 68.6 0.76 At3g46620 823815 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. H.G. S.X.
0.53 68.6 0.71 At4g27657 828879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.53 68.6 0.68 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. H.G. S.X.
0.51 66.3 0.71 At4g24570 828559 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. H.G. S.X.
0.48 62.5 0.70 At2g40000 818588 HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;PO O.I. H.G. S.X.
0.47 61.2 0.66 At5g61600 836281 ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. H.G. S.X.
0.46 59.8 0.65 At5g59730 836094 ATEXO70H7 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. H.G. S.X.
0.45 58.3 0.72 At5g59820 836103 RHL41 (RESPONSIVE TO HIGH LIGHT 41) Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. O.I. H.G. S.X.
0.44 57.2 0.69 At4g27280 828836 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:unknown;MPOF O.I. H.G. S.X.
0.42 53.9 0.68 At1g19180 838501 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. H.G. S.X.
0.42 53.9 0.62 At5g04340 830313 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) putative c2h2 zinc finger transcription factor mRNA, O.I. H.G. S.X.
0.37 45.0 0.62 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF O.I. H.G. S.X.
0.36 43.6 0.63 At1g28370 839733 ERF11 (ERF DOMAIN PROTEIN 11) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. H.G. S.X.
0.35 41.6 0.62 At3g55980 824764 SZF1 (SALT-INDUCIBLE ZINC FINGER 1) F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.58	73.8	1.00	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.74	86.1	0.76	At1g74450	843786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.72	84.8	0.85	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.70	83.5	0.71	At1g74930	843832	ORA47	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	H.G.	S.X.
0.69	82.9	0.75	At4g29780	829100	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MPF	O.I.	H.G.	S.X.
0.66	80.1	0.71	At2g05050	3767735	catalytic	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.65	79.6	0.77	At1g27730	839666	STZ (salt tolerance zinc finger)	Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress.	O.I.	H.G.	S.X.
0.62	77.3	0.78	At1g18740	838456	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PA	O.I.	H.G.	S.X.
0.62	77.3	0.72	At3g61190	825291	BAP1 (BON ASSOCIATION PROTEIN 1)	Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.	O.I.	H.G.	S.X.
0.60	75.7	0.69	At4g34410	829591	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	H.G.	S.X.
0.58	73.8	0.69	At3g28340	822462	GATL10 (Galacturonosyltransferase-like 10)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	H.G.	S.X.
0.56	73.0	0.62	At5g45340	834570	CYP707A3	Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).	O.I.	H.G.	S.X.
0.55	70.6	0.70	At5g59550	836074	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB	O.I.	H.G.	S.X.
0.54	69.5	0.64	At4g17500	827464	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	H.G.	S.X.
0.53	68.6	0.76	At3g46620	823815	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB	O.I.	H.G.	S.X.
0.53	68.6	0.71	At4g27657	828879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.53	68.6	0.68	At1g80840	844423	WRKY40	Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	H.G.	S.X.
0.51	66.3	0.71	At4g24570	828559	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	H.G.	S.X.
0.48	62.5	0.70	At2g40000	818588	HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)	F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.47	61.2	0.66	At5g61600	836281	ethylene-responsive element-binding family protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	H.G.	S.X.
0.46	59.8	0.65	At5g59730	836094	ATEXO70H7 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	H.G.	S.X.
0.45	58.3	0.72	At5g59820	836103	RHL41 (RESPONSIVE TO HIGH LIGHT 41)	Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.	O.I.	H.G.	S.X.
0.44	57.2	0.69	At4g27280	828836	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:unknown;MPOF	O.I.	H.G.	S.X.
0.42	53.9	0.68	At1g19180	838501	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	H.G.	S.X.
0.42	53.9	0.62	At5g04340	830313	ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)	putative c2h2 zinc finger transcription factor mRNA,	O.I.	H.G.	S.X.
0.37	45.0	0.62	At2g41640	818762	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF	O.I.	H.G.	S.X.
0.36	43.6	0.63	At1g28370	839733	ERF11 (ERF DOMAIN PROTEIN 11)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	H.G.	S.X.
0.35	41.6	0.62	At3g55980	824764	SZF1 (SALT-INDUCIBLE ZINC FINGER 1)	F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.6 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.6 99.8 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
50.2 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
44.8 99.8 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
41.7 99.8 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
36.4 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.0 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7 99.7 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
35.2 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.6 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.9 99.7 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
33.9 99.7 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
33.8 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.8 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.8 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.4 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.0 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.7 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.4 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.3 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.1 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.1 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.9 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.5 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.4 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.8 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.9 99.7 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
27.6 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.5 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.7 99.7 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
23.4 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.5 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.0 99.5 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.9 99.5 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
17.3 99.5 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.6 99.5 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.4 99.4 E-NASC-76-raw-cel-1359879132
13.6 99.4 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.1 99.4 E-NASC-76-raw-cel-1359879106
12.6 99.3 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.1 99.3 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.9 99.3 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.1 99.2 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
9.5 99.1 E-MEXP-509-raw-cel-829148703
9.1 99.1 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
63.6	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.6	99.8	GSM133757	Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
50.2	99.8	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
44.8	99.8	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
41.7	99.8	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
36.4	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.0	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7	99.7	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
35.2	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.6	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.9	99.7	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
33.9	99.7	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
33.8	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.8	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.8	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.4	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.0	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.7	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.4	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
30.3	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.1	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.1	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.9	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.5	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.4	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.8	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.9	99.7	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
27.6	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
27.5	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.7	99.7	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
23.4	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.5	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.0	99.5	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.9	99.5	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
17.3	99.5	GSM133759	Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.6	99.5	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.4	99.4	E-NASC-76-raw-cel-1359879132
13.6	99.4	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.1	99.4	E-NASC-76-raw-cel-1359879106
12.6	99.3	GSM284389	Arabidopsis GMPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.1	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.9	99.3	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.1	99.2	GSM189112	HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1	GSE7796	Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
9.5	99.1	E-MEXP-509-raw-cel-829148703
9.1	99.1	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.103 8 GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
0.069 1 GO:0009643
0.069 1 GO:0035264 The increase in size or mass of an entire multicellular organism, as opposed to cell growth.

SF	Genes	GO ID	Process Name
0.103	8	GO:0010200	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
0.069	1	GO:0009643
0.069	1	GO:0035264	The increase in size or mass of an entire multicellular organism, as opposed to cell growth.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.040 1 00906 Carotenoid biosynthesis

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.040	1	00906	Carotenoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At4g27652
Gene name	unknown protein
Module size	28 genes
NF	0.54
%ile	75.5

Co-expression analysis

Gene ID At4g27652 Gene name unknown protein Module size 28 genes NF 0.54 %ile 75.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.040100906Carotenoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At4g27652

Gene name unknown protein

Module size 28 genes

NF 0.54

%ile 75.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.040 1 00906 Carotenoid biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays