Co-expression analysis

Gene ID At4g26600
Gene name nucleolar protein, putative
Module size 35 genes
NF 0.49
%ile 68.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7083.51.00At4g26600828767nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.H.G.S.X.
0.7788.00.91At4g05410825889transducin family protein / WD-40 repeat family proteinF:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVAO.I.H.G.S.X.
0.7586.90.91At3g21540821708transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBAO.I.H.G.S.X.
0.7184.20.91At3g57940824963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPVO.I.H.G.S.X.
0.6982.90.90At3g09720820129DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.6982.90.91At2g40700818665DEAD/DEAH box helicase, putative (RH17)F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAVO.I.H.G.S.X.
0.6781.60.90At3g06530819831bindingF:binding;P:unknown;C:chloroplast, vacuole;MFOPBO.I.H.G.S.X.
0.6478.90.91At3g10530820218transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMFOPAO.I.H.G.S.X.
0.6075.70.89At3g55510824716RBL (REBELOTE)F:unknown;P:floral meristem determinacy;C:nucleus;MFOPO.I.H.G.S.X.
0.6075.70.89At4g02400828039-F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVAO.I.H.G.S.X.
0.5974.70.89At4g04940825833transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.H.G.S.X.
0.5974.70.91At5g61770836299PPAN (PETER PAN-LIKE PROTEIN)F:unknown;P:unknown;C:cellular_component unknown;MOFPVBO.I.H.G.S.X.
0.5570.60.90At5g06550830543-F:molecular_function unknown;P:cell surface receptor linked signal transduction;C:unknown;MBOFPO.I.H.G.S.X.
0.5570.60.91At1g63810842684-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPAO.I.H.G.S.X.
0.5368.60.89At3g11964820370RNA bindingF:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPAO.I.H.G.S.X.
0.5368.60.92At4g28450828962nucleotide binding / protein bindingThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.H.G.S.X.
0.5368.60.90At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAO.I.H.G.S.X.
0.5267.40.89At3g18600821391DEAD/DEAH box helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAVO.I.H.G.S.X.
0.4963.50.89At5g64420836563DNA polymerase V familyF:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPVO.I.H.G.S.X.
0.4963.50.91At1g69070843239-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVAO.I.H.G.S.X.
0.4659.80.88At5g14050831254transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAVO.I.H.G.S.X.
0.4558.30.90At4g01560828136MEE49 (maternal effect embryo arrest 49)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPAO.I.H.G.S.X.
0.4558.30.88At1g8075084441460S ribosomal protein L7 (RPL7A)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit;MOFPAO.I.H.G.S.X.
0.4558.30.89At1g75200843857flavodoxin family protein / radical SAM domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MBOFPAO.I.H.G.S.X.
0.4355.30.88At2g17250816230EMB2762 (EMBRYO DEFECTIVE 2762)F:molecular_function unknown;P:biological_process unknown;C:membrane;FMOPO.I.H.G.S.X.
0.4253.90.90At3g22310821800PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1)Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.O.I.H.G.S.X.
0.4152.40.88At3g01160820504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFBPVAO.I.H.G.S.X.
0.4050.80.88At1g13160837874SDA1 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVAO.I.H.G.S.X.
0.3643.60.89At5g65900836719DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;MOBFPVAO.I.H.G.S.X.
0.3643.60.89At1g31660840053-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.H.G.S.X.
0.3439.80.89At5g15810831438N2,N2-dimethylguanosine tRNA methyltransferase family proteinF:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBPO.I.H.G.S.X.
0.3338.10.90At3g15080820738exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBO.I.H.G.S.X.
0.3133.80.89At5g10010830863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFBPVAO.I.H.G.S.X.
0.3133.80.89At5g14520831303pescadillo-relatedF:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOPO.I.H.G.S.X.
0.2624.40.90At1g72320843564APUM23 (Arabidopsis Pumilio 23)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.299.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
42.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.199.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
39.499.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.499.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.599.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.399.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.399.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.199.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.299.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.199.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.199.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.099.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
23.999.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.499.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.299.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.699.6GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
19.999.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.299.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.499.4GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
14.299.4E-MEXP-1138-raw-cel-1432772650
14.299.4GSM142652MC002_ATH1_A10.3-dubos-wthGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
13.099.4GSM142651MC002_ATH1_A10.2-dubos-wthGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
12.799.3E-MEXP-1138-raw-cel-1432772522
12.799.3E-MEXP-285-raw-cel-440782725
12.799.3GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
12.699.3GSM142650MC002_ATH1_A10.1-dubos-wthGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
12.399.3GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
12.399.3E-MEXP-285-raw-cel-440782791
11.699.3GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
11.599.3E-MEXP-1138-raw-cel-1432772586
11.199.2GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
10.999.2GSM142636MC002_ATH1_A5.2-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.999.2GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.799.2GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.199.2GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.999.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.899.1GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.299.1GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
9.199.1GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
8.899.0E-MEXP-1138-raw-cel-1432773290
8.799.0E-MEXP-1138-raw-cel-1432772682

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1495GO:0006364Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.Link to AmiGO
0.0531GO:0007166Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell.Link to AmiGO
0.0501GO:0000266The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.007103010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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