CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g26230

Gene name 60S ribosomal protein L31 (RPL31B)

Module size 9 genes

NF 0.29

%ile 35.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At4g26230 828729 60S ribosomal protein L31 (RPL31B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPAFB O.I. H.G. S.X.
0.75 86.9 0.96 At5g56710 835772 60S ribosomal protein L31 (RPL31C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, cell wall;MOPAFB O.I. H.G. S.X.
0.44 57.2 0.94 At1g09590 837486 60S ribosomal protein L21 (RPL21A) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, chloroplast;MOAFP O.I. H.G. S.X.
0.36 43.6 0.93 At3g18740 821405 60S ribosomal protein L30 (RPL30C) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPB O.I. H.G. S.X.
0.34 39.8 0.94 At3g60245 825195 60S ribosomal protein L37a (RPL37aC) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. H.G. S.X.
0.29 30.3 0.93 At5g03850 831692 40S ribosomal protein S28 (RPS28B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPF O.I. H.G. S.X.
0.22 17.5 0.93 At3g58700 825039 60S ribosomal protein L11 (RPL11B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole;BOAMPF O.I. H.G. S.X.
0.19 12.7 0.94 At4g29410 829062 60S ribosomal protein L28 (RPL28C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFO O.I. H.G. S.X.
0.12 4.9 0.93 At3g05560 819722 60S ribosomal protein L22-2 (RPL22B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOP O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At4g26230	828729	60S ribosomal protein L31 (RPL31B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPAFB	O.I.	H.G.	S.X.
0.75	86.9	0.96	At5g56710	835772	60S ribosomal protein L31 (RPL31C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, cell wall;MOPAFB	O.I.	H.G.	S.X.
0.44	57.2	0.94	At1g09590	837486	60S ribosomal protein L21 (RPL21A)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, chloroplast;MOAFP	O.I.	H.G.	S.X.
0.36	43.6	0.93	At3g18740	821405	60S ribosomal protein L30 (RPL30C)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPB	O.I.	H.G.	S.X.
0.34	39.8	0.94	At3g60245	825195	60S ribosomal protein L37a (RPL37aC)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	H.G.	S.X.
0.29	30.3	0.93	At5g03850	831692	40S ribosomal protein S28 (RPS28B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPF	O.I.	H.G.	S.X.
0.22	17.5	0.93	At3g58700	825039	60S ribosomal protein L11 (RPL11B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole;BOAMPF	O.I.	H.G.	S.X.
0.19	12.7	0.94	At4g29410	829062	60S ribosomal protein L28 (RPL28C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFO	O.I.	H.G.	S.X.
0.12	4.9	0.93	At3g05560	819722	60S ribosomal protein L22-2 (RPL22B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOP	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.5 99.8 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
52.8 99.8 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
35.1 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.5 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.2 99.7 E-MEXP-1138-raw-cel-1432773290
30.1 99.7 E-MEXP-1138-raw-cel-1432773034
29.9 99.7 E-MEXP-1138-raw-cel-1432773162
29.5 99.7 E-MEXP-1138-raw-cel-1432773258
26.0 99.7 E-MEXP-1138-raw-cel-1432773322
25.9 99.7 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
23.7 99.6 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
22.8 99.6 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
21.8 99.6 E-MEXP-1138-raw-cel-1432773066
21.7 99.6 E-MEXP-1138-raw-cel-1432773226
20.2 99.6 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
19.6 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.3 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.1 99.6 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
18.9 99.5 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.6 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.4 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.9 99.5 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.9 99.5 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.3 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.2 99.5 E-MEXP-828-raw-cel-1156922342
17.2 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.1 99.5 E-MEXP-828-raw-cel-1156922923
16.8 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.3 99.5 E-MEXP-1138-raw-cel-1432772554
16.3 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.1 99.5 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
16.1 99.5 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.0 99.5 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.0 99.5 E-MEXP-828-raw-cel-1156922485
15.4 99.5 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.3 99.4 E-MEXP-828-raw-cel-1156922296
14.8 99.4 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.7 99.4 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.4 99.4 E-MEXP-1138-raw-cel-1432773194
14.2 99.4 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.2 99.4 E-MEXP-1138-raw-cel-1432772682
14.2 99.4 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
14.1 99.4 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0 99.4 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.4 99.4 E-MEXP-828-raw-cel-1156922509
13.3 99.4 E-MEXP-1138-raw-cel-1432772618
12.9 99.3 E-MEXP-828-raw-cel-1156922750
12.9 99.3 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
12.8 99.3 E-MEXP-1138-raw-cel-1432772586
12.8 99.3 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.7 99.3 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.6 99.3 E-MEXP-1138-raw-cel-1432773354
12.5 99.3 E-MEXP-828-raw-cel-1156922987
12.3 99.3 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.2 99.3 E-MEXP-828-raw-cel-1156922368
11.7 99.3 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.7 99.3 E-MEXP-828-raw-cel-1156922829
11.3 99.3 E-MEXP-828-raw-cel-1156922809
11.0 99.2 E-MEXP-828-raw-cel-1156922905
10.9 99.2 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
10.8 99.2 E-MEXP-1138-raw-cel-1432772650
10.7 99.2 E-MEXP-828-raw-cel-1156922968
10.5 99.2 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.2 99.2 E-MEXP-1138-raw-cel-1432773386
10.1 99.2 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.1 99.2 E-MEXP-828-raw-cel-1156922944
9.9 99.1 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
9.9 99.1 E-MEXP-828-raw-cel-1156922467
9.8 99.1 E-MEXP-828-raw-cel-1156922533
9.8 99.1 E-MEXP-828-raw-cel-1156922794
9.5 99.1 E-MEXP-828-raw-cel-1156922772
9.4 99.1 E-MEXP-828-raw-cel-1156922455
9.3 99.1 E-MEXP-828-raw-cel-1156922386
9.2 99.1 GSM142633 MC002_ATH1_A4.2-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2 99.1 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.9 99.0 E-MEXP-828-raw-cel-1156922416
8.9 99.0 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.7 99.0 E-MEXP-1138-raw-cel-1432772522
8.6 99.0 E-MEXP-1138-raw-cel-1432773098

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
62.5	99.8	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
52.8	99.8	GSM284396	Arabidopsis GPSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
35.1	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.5	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
30.2	99.7	E-MEXP-1138-raw-cel-1432773290
30.1	99.7	E-MEXP-1138-raw-cel-1432773034
29.9	99.7	E-MEXP-1138-raw-cel-1432773162
29.5	99.7	E-MEXP-1138-raw-cel-1432773258
26.0	99.7	E-MEXP-1138-raw-cel-1432773322
25.9	99.7	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
23.7	99.6	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
22.8	99.6	GSM311293	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
21.8	99.6	E-MEXP-1138-raw-cel-1432773066
21.7	99.6	E-MEXP-1138-raw-cel-1432773226
20.2	99.6	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
19.6	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.3	99.6	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.1	99.6	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
18.9	99.5	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.6	99.5	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.4	99.5	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.9	99.5	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.9	99.5	GSM284389	Arabidopsis GMPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.3	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.2	99.5	E-MEXP-828-raw-cel-1156922342
17.2	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.1	99.5	E-MEXP-828-raw-cel-1156922923
16.8	99.5	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.3	99.5	E-MEXP-1138-raw-cel-1432772554
16.3	99.5	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.1	99.5	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
16.1	99.5	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.0	99.5	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.0	99.5	E-MEXP-828-raw-cel-1156922485
15.4	99.5	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.3	99.4	E-MEXP-828-raw-cel-1156922296
14.8	99.4	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.7	99.4	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
14.4	99.4	E-MEXP-1138-raw-cel-1432773194
14.2	99.4	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.2	99.4	E-MEXP-1138-raw-cel-1432772682
14.2	99.4	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
14.1	99.4	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0	99.4	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.4	99.4	E-MEXP-828-raw-cel-1156922509
13.3	99.4	E-MEXP-1138-raw-cel-1432772618
12.9	99.3	E-MEXP-828-raw-cel-1156922750
12.9	99.3	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
12.8	99.3	E-MEXP-1138-raw-cel-1432772586
12.8	99.3	GSM131588	ATGE_35_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.7	99.3	GSM311294	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.6	99.3	E-MEXP-1138-raw-cel-1432773354
12.5	99.3	E-MEXP-828-raw-cel-1156922987
12.3	99.3	GSM131589	ATGE_35_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.2	99.3	E-MEXP-828-raw-cel-1156922368
11.7	99.3	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.7	99.3	E-MEXP-828-raw-cel-1156922829
11.3	99.3	E-MEXP-828-raw-cel-1156922809
11.0	99.2	E-MEXP-828-raw-cel-1156922905
10.9	99.2	GSM311286	Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
10.8	99.2	E-MEXP-1138-raw-cel-1432772650
10.7	99.2	E-MEXP-828-raw-cel-1156922968
10.5	99.2	GSM128662	Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.2	99.2	E-MEXP-1138-raw-cel-1432773386
10.1	99.2	GSM131590	ATGE_35_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
10.1	99.2	E-MEXP-828-raw-cel-1156922944
9.9	99.1	GSM311284	Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
9.9	99.1	E-MEXP-828-raw-cel-1156922467
9.8	99.1	E-MEXP-828-raw-cel-1156922533
9.8	99.1	E-MEXP-828-raw-cel-1156922794
9.5	99.1	E-MEXP-828-raw-cel-1156922772
9.4	99.1	E-MEXP-828-raw-cel-1156922455
9.3	99.1	E-MEXP-828-raw-cel-1156922386
9.2	99.1	GSM142633	MC002_ATH1_A4.2-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2	99.1	GSM142634	MC002_ATH1_A4.3-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.9	99.0	E-MEXP-828-raw-cel-1156922416
8.9	99.0	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.7	99.0	E-MEXP-1138-raw-cel-1432772522
8.6	99.0	E-MEXP-1138-raw-cel-1432773098

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.085 5 GO:0042254 The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.085	5	GO:0042254	The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.050 6 03010 Ribosome

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.050	6	03010	Ribosome

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	At4g26230
Gene name	60S ribosomal protein L31 (RPL31B)
Module size	9 genes
NF	0.29
%ile	35.5

Co-expression analysis

Gene ID At4g26230 Gene name 60S ribosomal protein L31 (RPL31B) Module size 9 genes NF 0.29 %ile 35.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0855GO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.050603010Ribosome

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At4g26230

Gene name 60S ribosomal protein L31 (RPL31B)

Module size 9 genes

NF 0.29

%ile 35.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.085 5 GO:0042254 The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.

SF Genes KEGG ID Pathway name Link to KEGG
0.050 6 03010 Ribosome

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays