Co-expression analysis

Gene ID At4g26120
Gene name ankyrin repeat family protein / BTB/POZ domain-containing protein
Module size 5 genes
NF 0.32
%ile 41.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4050.81.00At4g26120828718ankyrin repeat family protein / BTB/POZ domain-containing proteinF:protein binding;P:response to chitin;C:cellular_component unknown;OMPBFVO.I.H.G.S.X.
0.4050.80.84At1g34420840345leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.H.G.S.X.
0.4050.80.80At1g61420842436S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.3338.10.82At5g48410834896ATGLR1.3member of Putative ligand-gated ion channel subunit familyO.I.H.G.S.X.
0.2014.40.79At1g63350842641disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:cellular_component unknown;PMBOFAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.499.7GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
27.699.7E-MEXP-828-raw-cel-1156922905
27.099.7E-MEXP-828-raw-cel-1156922467
26.899.7E-MEXP-828-raw-cel-1156922342
23.699.6E-MEXP-828-raw-cel-1156922368
23.399.6E-MEXP-828-raw-cel-1156922968
22.499.6E-MEXP-828-raw-cel-1156922613
22.299.6E-MEXP-1299-raw-cel-1519902871
20.899.6GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
20.299.6GSM157327Hammond_3-11_Potassium-starved-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
19.299.6E-MEXP-828-raw-cel-1156922595
18.699.5GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
18.399.5GSM158702HY213-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
17.999.5GSM157324Hammond_3-17_Potassium-starved-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
17.999.5GSM157328Hammond_3-12_Caesium-treated-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
17.999.5E-MEXP-828-raw-cel-1156922872
17.999.5GSM158703WT-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
17.299.5GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
17.099.5E-MEXP-828-raw-cel-1156922809
16.899.5E-MEXP-828-raw-cel-1156922296
16.899.5Capper_1-9_E6_estradiol
16.899.5E-MEXP-828-raw-cel-1156922455
16.099.5E-MEXP-828-raw-cel-1156922829
15.799.5E-MEXP-828-raw-cel-1156922944
14.899.4Capper_1-10_E6_water
14.899.4E-MEXP-828-raw-cel-1156922846
14.799.4GSM158701HY213-MOCK-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
14.499.4Capper_1-7_D9_estradiol
14.199.4E-MEXP-828-raw-cel-1156922533
13.899.4E-MEXP-828-raw-cel-1156922987
13.499.4E-MEXP-828-raw-cel-1156922572
13.499.4GSM142730CH001_ATH1_A009-Hampt-wsc_repeatGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
13.399.4E-MEXP-828-raw-cel-1156922634
13.399.4GSM133400Knight_2-3_sfr6-lt_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
13.199.4E-MEXP-1443-raw-cel-1581869515
13.099.4E-MEXP-828-raw-cel-1156922318
12.899.3E-MEXP-1299-raw-cel-1519902498
12.899.3E-TABM-63-raw-cel-681137195
12.599.3E-MEXP-828-raw-cel-1156922794
12.499.3E-MEXP-828-raw-cel-1156922708
12.399.3GSM142728CH001_ATH1_A007-Hampt-c4bGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
12.299.3E-MEXP-828-raw-cel-1156922553
12.199.3Capper_1-11_E10_estradiol
12.199.3E-MEXP-828-raw-cel-1156922772
12.099.3Capper_1-4_B8_water
11.899.3E-MEXP-828-raw-cel-1156922750
11.899.3E-MEXP-828-raw-cel-1156922923
11.799.3E-MEXP-828-raw-cel-1156922731
11.499.3E-MEXP-828-raw-cel-1156922485
11.499.3Capper_1-1_A3_estradiol
11.199.2Capper_1-8_D9_water
11.099.2GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
11.099.2E-MEXP-828-raw-cel-1156922891
10.699.2GSM128703Heinekamp_1-12_cs-root_Rep3_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137Link to GEO
10.599.2E-MEXP-828-raw-cel-1156922509
10.499.2E-MEXP-828-raw-cel-1156922659
10.399.2E-MEXP-828-raw-cel-1156922684
10.299.2GSM7717804h low CO2 + light replicate BGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
10.199.2GSM7718004h low CO2 + dark replicate BGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
9.999.1GSM184560Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.899.1GSM157325Hammond_3-18_Caesium-treated-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
9.799.1GSM25316324h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
9.699.1GSM184561Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.599.1Capper_1-12_E10_water
9.599.1GSM2531618h into an extended nightAGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
9.199.1GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
9.199.1GSM157323Hammond_3-16_Control-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
9.199.1GSM128699Heinekamp_1-8_cs-root_Rep2_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137Link to GEO
9.099.1GSM2531606h into an extended nightGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
8.999.0GSM2531628h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
8.999.0GSM142731CH001_ATH1_A010-Hampt-akcGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
8.899.0E-MEXP-1299-raw-cel-1519902780
8.699.0E-MEXP-828-raw-cel-1156922416
8.699.0GSM142732CH001_ATH1_A011-Hampt-c4cGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0741GO:0006874Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.Link to AmiGO
0.0591GO:0048544The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species.Link to AmiGO
0.0161GO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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