Co-expression analysis

Gene ID At4g23800
Gene name high mobility group (HMG1/2) family protein
Module size 5 genes
NF 0.70
%ile 88.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.6781.61.00At4g23800828480high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.H.G.S.X.
0.8089.80.94At5g55520835646-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.6781.60.92At1g03780839140targeting protein-relatedHomolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.O.I.H.G.S.X.
0.6781.60.90At3g20150821558kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAVO.I.H.G.S.X.
0.6781.60.89At5g51600835234PLE (PLEIADE)Mutant has defective roots. Essential for giant cell ontogenesis. Role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.199.6E-MEXP-1797-raw-cel-1669768075
22.499.6E-MEXP-1797-raw-cel-1669767949
22.199.6E-MEXP-1797-raw-cel-1669768021
19.299.6E-MEXP-1797-raw-cel-1669767994
15.399.4E-MEXP-1797-raw-cel-1669767985
13.499.4E-MEXP-1797-raw-cel-1669768066
11.899.3E-MEXP-1797-raw-cel-1669767976
11.699.3E-MEXP-1797-raw-cel-1669768003
11.699.3E-MEXP-509-raw-cel-829148666
11.399.3GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
11.299.2E-MEXP-1797-raw-cel-1669768057
11.199.2GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.199.2E-MEXP-509-raw-cel-829148808
10.799.2E-MEXP-509-raw-cel-829148385
9.999.1E-ATMX-13-raw-cel-1556149919
9.999.1E-MEXP-1797-raw-cel-1669768012
9.099.1E-MEXP-509-raw-cel-829148525
8.899.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.899.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.799.0E-MEXP-509-raw-cel-829148703
8.699.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.699.0GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.3331GO:0052096The assembly by an organism of a syncytium, a nematode-induced multi-nucleate and physiologically active aggregation of fused root cells which exclusively provides the nematode with nourishment during its sedentary life, for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.Link to AmiGO
0.2861GO:0051225The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart.Link to AmiGO
0.2501GO:0046785The addition of tubulin heterodimers to one or both ends of a microtubule.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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