Co-expression analysis

Gene ID At4g22950
Gene name AGL19 (AGAMOUS-LIKE 19)
Module size 88 genes
NF 0.17
%ile 13.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g22950828394AGL19 (AGAMOUS-LIKE 19)MADS-box protein AGL19O.I.H.G.S.X.
0.3643.60.71At3g51960824359bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.H.G.S.X.
0.3643.60.70At2g36370818210ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBVO.I.H.G.S.X.
0.3338.10.70At5g18360831954disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAVO.I.H.G.S.X.
0.3338.10.69At5g65850836714F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3235.70.70At3g56250824791unknown proteinF:unknown;P:unknown;C:unknown;OFMPBO.I.H.G.S.X.
0.3235.70.71At2g27790817326nucleic acid binding / nucleotide bindingF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.3133.80.69At3g04490819605unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2930.30.72At3g19470821481F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2830.30.69At5g02680831842ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingF:aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;MPBOO.I.H.G.S.X.
0.2830.30.70At1g14690838034MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.H.G.S.X.
0.2726.20.70At1g70250843361receptor serine/threonine kinase, putativeEncodes a Protease inhibitor/seed storage/LTP family proteinO.I.H.G.S.X.
0.2624.40.71At5g35520833516MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis.O.I.H.G.S.X.
0.2624.40.70At2g17830816292F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2522.60.73At2g42160818816zinc finger (ubiquitin-hydrolase) domain-containing proteinF:protein binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.2420.70.70At4g19990827744FRS1 (FAR1-related sequence 1)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.2319.30.71At4g15240827190fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:Golgi apparatus;PMFOO.I.H.G.S.X.
0.2319.30.69At5g45220834558Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.H.G.S.X.
0.2319.30.70At2g31870817745TEJ (Sanskrit for 'bright')mutant has Long free-running circadian period; Poly (ADP-ribose) GlycohydrolaseO.I.H.G.S.X.
0.2319.30.69At5g37590833737bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MBFOAPO.I.H.G.S.X.
0.2217.50.72At5g22820832345bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.2217.50.71At4g295308290742,3-diketo-5-methylthio-1-phosphopentane phosphatase familyF:phosphatase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;MPOBFO.I.H.G.S.X.
0.2217.50.70At1g43770840971PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.2217.50.70At5g40820834082ATRAD3Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.O.I.H.G.S.X.
0.2115.80.70At4g00420828061double-stranded RNA-binding domain (DsRBD)-containing proteinF:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular, chloroplast;PO.I.H.G.S.X.
0.2115.80.69At3g580903769734-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.2014.40.70At5g38340833816disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMBOFAVO.I.H.G.S.X.
0.2014.40.69At1g73350843670unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POMFO.I.H.G.S.X.
0.2014.40.69At4g13330826963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.2014.40.69At4g17050827413UGLYAH (UREIDOGLYCINE AMINOHYDROLASE)F:transcription factor activity;P:regulation of transcription;C:endomembrane system;BOPFAO.I.H.G.S.X.
0.2014.40.70At5g19830832103aminoacyl-tRNA hydrolaseF:aminoacyl-tRNA hydrolase activity;P:translation;C:mitochondrion;BOPFMO.I.H.G.S.X.
0.2014.40.69At5g53430835424SDG29 (SET DOMAIN GROUP 29)Homology Subgroup III; Orthology Group 2 - A putative histone methyltransferase (predicted to methylate H3K4) related to the Drosophila trithorax group proteins TRX and TRR and the yeast gene SET1. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.O.I.H.G.S.X.
0.2014.40.70At1g68980843231pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.1912.70.69At3g09370820094MYB3R-3 (myb domain protein 3R-3)putative c-myb-like transcription factor (MYB3R3) mRNA,O.I.H.G.S.X.
0.1912.70.70At2g14050815890MCM9F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:cellular_component unknown;MOBFAPVO.I.H.G.S.X.
0.1912.70.69At1g55280841973-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.1912.70.70At1g78130844149UNE2 (unfertilized embryo sac 2)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:double fertilization forming a zygote and endosperm;C:membrane;BOMAFPVO.I.H.G.S.X.
0.1811.40.68At4g14310827072-F:unknown;P:biological_process unknown;C:cell wall;OMBFPAVO.I.H.G.S.X.
0.1811.40.69At3g50430824207unknown proteinF:unknown;P:unknown;C:unknown;MPO.I.H.G.S.X.
0.1811.40.74At4g01550828144anac069 (Arabidopsis NAC domain containing protein 69)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO.I.H.G.S.X.
0.1811.40.69At3g15390820778SDE5 (silencing defective 5)Encodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing.O.I.H.G.S.X.
0.1710.20.69At1g70150843351zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.1710.20.70At1g01740839253protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVAO.I.H.G.S.X.
0.1710.20.70At2g17970816307oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.H.G.S.X.
0.168.80.69At1g62130842509AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:chloroplast;OBMFPAVO.I.H.G.S.X.
0.168.80.70At4g24860828589AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAVO.I.H.G.S.X.
0.168.80.70At5g53010835380calcium-transporting ATPase, putativeF:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.H.G.S.X.
0.157.80.71At4g34540829605isoflavone reductase family proteinencodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.O.I.H.G.S.X.
0.157.80.69At3g52260824391pseudouridine synthase family proteinF:pseudouridine synthase activity, RNA binding;P:pseudouridine synthesis;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.157.80.69At1g52630841695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.157.80.71At1g64070842711RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1)Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.H.G.S.X.
0.157.80.69At1g50910841513unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.157.80.69At1g31460840036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPVO.I.H.G.S.X.
0.157.80.69At3g07930819984HhH-GPD base excision DNA repair family proteinF:unknown;P:base-excision repair;C:unknown;MPOO.I.H.G.S.X.
0.146.80.69At5g11600831032unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMPFBO.I.H.G.S.X.
0.146.80.70At3g17180820975scpl33 (serine carboxypeptidase-like 33)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.146.80.71At1g68160843144unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POFO.I.H.G.S.X.
0.146.80.69At4g25120828615ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolaseF:ATP-dependent DNA helicase activity, hydrolase activity, DNA binding, ATP binding;P:DNA repair;C:unknown;BOFAPMVO.I.H.G.S.X.
0.146.80.70At5g15540831407EMB2773 (EMBRYO DEFECTIVE 2773)Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.O.I.H.G.S.X.
0.135.80.69At3g20420821587RTL2 (RNASE THREE-LIKE PROTEIN 2)double-stranded RNA binding / ribonuclease III. Required for 3' external transcribed spacer (ETS) cleavage of the pre-rRNA in vivo. Localizes in the nucleus and cytoplasm.O.I.H.G.S.X.
0.135.80.70At3g28640822494pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFO.I.H.G.S.X.
0.135.80.70At4g34360829586protease-relatedF:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMPFAO.I.H.G.S.X.
0.135.80.69At2g17110816215unknown proteinF:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFBOO.I.H.G.S.X.
0.135.80.71At2g40810818678AtATG18cF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.124.90.69At3g05250819689zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPVOFO.I.H.G.S.X.
0.124.90.69At4g36150829772disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAVO.I.H.G.S.X.
0.124.90.73At3g53090824475UPL7encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.O.I.H.G.S.X.
0.124.90.69At5g64390836560HEN4 (HUA ENHANCER 4)encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl.O.I.H.G.S.X.
0.124.90.70At2g01735814703RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS)encodes a RING-H2 zinc finger protein essential for seed development.O.I.H.G.S.X.
0.124.90.70At2g01740814704pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.124.90.69At5g20580832180unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOO.I.H.G.S.X.
0.114.10.69At4g23840828483leucine-rich repeat family proteinF:protein binding;P:unknown;C:cellular_component unknown;BMPOFVAO.I.H.G.S.X.
0.103.40.70At1g35660840468unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFBO.I.H.G.S.X.
0.103.40.70At3g57230824890AGL16 (AGAMOUS-LIKE 16)MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.O.I.H.G.S.X.
0.103.40.69At1g59790842272cullin-relatedF:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MFPOO.I.H.G.S.X.
0.082.30.73At2g01980814729SOS1 (SALT OVERLY SENSITIVE 1)Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.O.I.H.G.S.X.
0.082.30.69At3g04970819657zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.082.30.70At1g33400840233tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAO.I.H.G.S.X.
0.071.90.69At2g16595816160-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.H.G.S.X.
0.071.90.70At1g32330840125ATHSFA1Dmember of Heat Stress Transcription Factor (Hsf) familyO.I.H.G.S.X.
0.061.40.69At1g35470840440SPla/RYanodine receptor (SPRY) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.051.10.70At3g29170822567unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.051.10.69At4g22340828329phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putativeF:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFPO.I.H.G.S.X.
0.051.10.69At3g53030824469SRPK4 (Ser/Arg-rich protein kinase 4)Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.O.I.H.G.S.X.
0.051.10.69At1g44960841061-F:unknown;P:biological_process unknown;C:plasma membrane;BOPAMO.I.H.G.S.X.
0.051.10.70At2g44950819104HUB1 (HISTONE MONO-UBIQUITINATION 1)The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.O.I.H.G.S.X.
0.040.90.69At1g16040838175-F:molecular_function unknown;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPOO.I.H.G.S.X.
0.040.90.69At1g49710841394FUT12 (FUCOSYLTRANSFERASE 12)Encodes a protein with core α1,3-fucosyltransferase activity.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.499.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.899.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.599.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.999.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
46.799.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.199.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.899.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.799.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.199.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.799.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.399.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.699.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.099.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.699.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.699.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.199.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.399.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.199.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.099.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.199.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.499.5GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
15.199.4GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.199.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
13.099.4E-ATMX-1-raw-cel-1112746154
12.899.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.799.3GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.299.3GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
11.299.2GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.099.2GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
10.699.2GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.399.1GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.999.0GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.899.0GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0374GO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.Link to AmiGO
0.0273GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO
0.0221GO:0006513Addition of a single ubiquitin moiety to a protein.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.016103410Base excision repairLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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