CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g22070

Gene name WRKY31

Module size 22 genes

NF 0.24

%ile 25.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.44 57.2 1.00 At4g22070 828296 WRKY31 member of WRKY Transcription Factor; Group II-b O.I. H.G. S.X.
0.40 50.8 0.73 At4g21230 827872 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.38 46.7 0.73 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO O.I. H.G. S.X.
0.34 39.8 0.70 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. H.G. S.X.
0.34 39.8 0.73 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. H.G. S.X.
0.31 33.8 0.73 At1g14070 837967 FUT7 member of Xyloglucan fucosyltransferase family O.I. H.G. S.X.
0.29 30.3 0.70 At1g19230 838506 respiratory burst oxidase protein E (RbohE) / NADPH oxidase F:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOA O.I. H.G. S.X.
0.29 30.3 0.71 At1g35260 840415 MLP165 (MLP-LIKE PROTEIN 165) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. H.G. S.X.
0.28 30.3 0.69 At3g09270 820083 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. H.G. S.X.
0.27 26.2 0.69 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. H.G. S.X.
0.27 26.2 0.72 At5g51160 835190 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. H.G. S.X.
0.26 24.4 0.70 At1g13830 837944 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA O.I. H.G. S.X.
0.23 19.3 0.73 At5g06839 830575 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. H.G. S.X.
0.22 17.5 0.70 At4g18360 827563 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA O.I. H.G. S.X.
0.20 14.4 0.72 At2g37360 818312 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. H.G. S.X.
0.19 12.7 0.70 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.18 11.4 0.70 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. O.I. H.G. S.X.
0.17 10.2 0.72 At1g65610 842872 KOR2 F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF O.I. H.G. S.X.
0.15 7.8 0.71 At1g70300 843366 KUP6 potassium transporter O.I. H.G. S.X.
0.15 7.8 0.73 At2g36380 818211 PDR6 F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV O.I. H.G. S.X.
0.14 6.8 0.71 At5g24290 832496 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. H.G. S.X.
0.13 5.8 0.71 At5g13750 831220 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.44	57.2	1.00	At4g22070	828296	WRKY31	member of WRKY Transcription Factor; Group II-b	O.I.	H.G.	S.X.
0.40	50.8	0.73	At4g21230	827872	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	H.G.	S.X.
0.38	46.7	0.73	At5g24090	832474	acidic endochitinase (CHIB1)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO	O.I.	H.G.	S.X.
0.34	39.8	0.70	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	H.G.	S.X.
0.34	39.8	0.73	At3g26440	822248	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	H.G.	S.X.
0.31	33.8	0.73	At1g14070	837967	FUT7	member of Xyloglucan fucosyltransferase family	O.I.	H.G.	S.X.
0.29	30.3	0.70	At1g19230	838506	respiratory burst oxidase protein E (RbohE) / NADPH oxidase	F:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOA	O.I.	H.G.	S.X.
0.29	30.3	0.71	At1g35260	840415	MLP165 (MLP-LIKE PROTEIN 165)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.28	30.3	0.69	At3g09270	820083	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	H.G.	S.X.
0.27	26.2	0.69	At1g35250	840414	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA	O.I.	H.G.	S.X.
0.27	26.2	0.72	At5g51160	835190	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	H.G.	S.X.
0.26	24.4	0.70	At1g13830	837944	beta-1,3-glucanase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA	O.I.	H.G.	S.X.
0.23	19.3	0.73	At5g06839	830575	bZIP family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	H.G.	S.X.
0.22	17.5	0.70	At4g18360	827563	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA	O.I.	H.G.	S.X.
0.20	14.4	0.72	At2g37360	818312	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	H.G.	S.X.
0.19	12.7	0.70	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.18	11.4	0.70	At2g35000	818064	zinc finger (C3HC4-type RING finger) family protein	E3 ligase-like protein induced by chitin oligomers.	O.I.	H.G.	S.X.
0.17	10.2	0.72	At1g65610	842872	KOR2	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF	O.I.	H.G.	S.X.
0.15	7.8	0.71	At1g70300	843366	KUP6	potassium transporter	O.I.	H.G.	S.X.
0.15	7.8	0.73	At2g36380	818211	PDR6	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV	O.I.	H.G.	S.X.
0.14	6.8	0.71	At5g24290	832496	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	H.G.	S.X.
0.13	5.8	0.71	At5g13750	831220	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
75.0 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.2 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.0 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.8 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.1 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.7 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.2 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.6 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.3 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.5 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.6 99.7 E-MEXP-1138-raw-cel-1432773322
37.5 99.7 E-MEXP-1138-raw-cel-1432773258
36.6 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.5 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.3 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.1 99.7 E-MEXP-1138-raw-cel-1432773290
35.0 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.4 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.4 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.8 99.6 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.8 99.5 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.3 99.5 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.0 99.5 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.3 99.5 E-MEXP-265-raw-cel-414618394
16.3 99.5 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
16.1 99.5 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
15.4 99.5 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.9 99.4 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
14.7 99.4 E-MEXP-265-raw-cel-414618291
14.6 99.4 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.1 99.4 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.7 99.4 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
13.2 99.4 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
12.5 99.3 GSM133860 Beynon_1-3-cat-SpikeMix3_Rep1_ATH1 GSE5739 Comparison of CATMA, Affymetrix and Agilent arrays
12.5 99.3 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
11.8 99.3 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.8 99.3 E-MEXP-265-raw-cel-414618491
11.1 99.2 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.8 99.2 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.3 99.2 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.6 99.1 E-MEXP-509-raw-cel-829148561
9.5 99.1 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.9 99.0 E-MEXP-265-raw-cel-414618693
8.7 99.0 E-MEXP-449-raw-cel-676423253
8.6 99.0 E-MEXP-265-raw-cel-414618796

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
75.0	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
44.2	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.0	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.8	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.3	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.1	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.9	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.7	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
42.2	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.6	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.3	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.5	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.6	99.7	E-MEXP-1138-raw-cel-1432773322
37.5	99.7	E-MEXP-1138-raw-cel-1432773258
36.6	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.5	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.3	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.1	99.7	E-MEXP-1138-raw-cel-1432773290
35.0	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.4	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.4	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.8	99.6	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.8	99.5	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.3	99.5	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.0	99.5	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.3	99.5	E-MEXP-265-raw-cel-414618394
16.3	99.5	GSM131656	ATGE_27_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
16.1	99.5	GSM131655	ATGE_27_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
15.4	99.5	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.9	99.4	GSM131657	ATGE_27_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
14.7	99.4	E-MEXP-265-raw-cel-414618291
14.6	99.4	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.1	99.4	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.7	99.4	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
13.2	99.4	GSM133810	Diamond_A-3-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
12.5	99.3	GSM133860	Beynon_1-3-cat-SpikeMix3_Rep1_ATH1	GSE5739	Comparison of CATMA, Affymetrix and Agilent arrays
12.5	99.3	GSM133753	Turner_A-7-Turne-WT-Base1_SLD	GSE5729	Role of COV in vascular patterning
11.8	99.3	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.8	99.3	E-MEXP-265-raw-cel-414618491
11.1	99.2	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.8	99.2	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.3	99.2	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.6	99.1	E-MEXP-509-raw-cel-829148561
9.5	99.1	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.9	99.0	E-MEXP-265-raw-cel-414618693
8.7	99.0	E-MEXP-449-raw-cel-676423253
8.6	99.0	E-MEXP-265-raw-cel-414618796

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.083 1 GO:0015904 The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
0.080 1 GO:0046677 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
0.054 1 GO:0042546 The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

SF	Genes	GO ID	Process Name
0.083	1	GO:0015904	The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
0.080	1	GO:0046677	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
0.054	1	GO:0042546	The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.037 1 00630 Glyoxylate and dicarboxylate metabolism
0.021 1 00520 Amino sugar and nucleotide sugar metabolism
0.002 1 01100 Metabolic pathways

SF	Genes	KEGG ID	Pathway name
0.037	1	00630	Glyoxylate and dicarboxylate metabolism
0.021	1	00520	Amino sugar and nucleotide sugar metabolism
0.002	1	01100	Metabolic pathways

Inter-species module comparison

A co-expression module including the grape gene, 1622333_at, orthologous to the query gene, At4g22070

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 84.7 1622333_at - hypothetical protein LOC100264006 - 6e-25 At2g47260 WRKY23 O.I. H.G. S.X.
0.60 81.9 1615257_at - hexose transporter-like - 6e-12 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) O.I. H.G. S.X.
0.56 79.4 1608366_at - hypothetical protein LOC100250312 - 1e+0 At5g12230 unknown protein O.I. H.G. S.X.
0.43 61.5 1607967_at - hypothetical protein LOC100261140 - 4e-1 At3g24860 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.40 57.7 1606489_at - hypothetical protein LOC100246245 - 4e-13 At4g25835 AAA-type ATPase family protein O.I. H.G. S.X.
0.40 57.7 1614444_at - hypothetical protein LOC100248687 - 1e+0 At1g49650 cell death associated protein-related O.I. H.G. S.X.
0.39 54.9 1621034_at - hypothetical protein LOC100244738 /// similar to phosphoenolpyruvate carboxykinase /// hypothetical protein LOC100257809 - 4e-110 At4g37870 PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) O.I. H.G. S.X.
0.33 45.7 1610428_at - hypothetical protein LOC100263040 - 2e-4 At1g32090 early-responsive to dehydration protein-related / ERD protein-related O.I. H.G. S.X.
0.31 41.3 1609303_at - hypothetical protein LOC100266613 - 1e+0 At4g20470 unknown protein O.I. H.G. S.X.
0.31 41.3 1606826_at - hypothetical protein LOC100250592 - 1e-7 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) O.I. H.G. S.X.
0.23 27.5 1607567_at - hypothetical protein LOC100242568 /// hypothetical protein LOC100257658 - 4e-1 At2g22900 galactosyl transferase GMA12/MNN10 family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.64	84.7	1622333_at	-	hypothetical protein LOC100264006	-	6e-25	At2g47260	WRKY23	O.I.	H.G.	S.X.
0.60	81.9	1615257_at	-	hexose transporter-like	-	6e-12	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	O.I.	H.G.	S.X.
0.56	79.4	1608366_at	-	hypothetical protein LOC100250312	-	1e+0	At5g12230	unknown protein	O.I.	H.G.	S.X.
0.43	61.5	1607967_at	-	hypothetical protein LOC100261140	-	4e-1	At3g24860	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.40	57.7	1606489_at	-	hypothetical protein LOC100246245	-	4e-13	At4g25835	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.40	57.7	1614444_at	-	hypothetical protein LOC100248687	-	1e+0	At1g49650	cell death associated protein-related	O.I.	H.G.	S.X.
0.39	54.9	1621034_at	-	hypothetical protein LOC100244738 /// similar to phosphoenolpyruvate carboxykinase /// hypothetical protein LOC100257809	-	4e-110	At4g37870	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	O.I.	H.G.	S.X.
0.33	45.7	1610428_at	-	hypothetical protein LOC100263040	-	2e-4	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.
0.31	41.3	1609303_at	-	hypothetical protein LOC100266613	-	1e+0	At4g20470	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	1606826_at	-	hypothetical protein LOC100250592	-	1e-7	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.
0.23	27.5	1607567_at	-	hypothetical protein LOC100242568 /// hypothetical protein LOC100257658	-	4e-1	At2g22900	galactosyl transferase GMA12/MNN10 family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	At4g22070
Gene name	WRKY31
Module size	22 genes
NF	0.24
%ile	25.3

Co-expression analysis

Gene ID At4g22070 Gene name WRKY31 Module size 22 genes NF 0.24 %ile 25.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.037100630Glyoxylate and dicarboxylate metabolism0.021100520Amino sugar and nucleotide sugar metabolism0.002101100Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID At4g22070

Gene name WRKY31

Module size 22 genes

NF 0.24

%ile 25.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.037 1 00630 Glyoxylate and dicarboxylate metabolism
0.021 1 00520 Amino sugar and nucleotide sugar metabolism
0.002 1 01100 Metabolic pathways

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays