Co-expression analysis

Gene ID At4g21900
Gene name antiporter/ drug transporter/ transporter
Module size 57 genes
NF 0.15
%ile 12.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g21900828279antiporter/ drug transporter/ transporterF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;MPOO.I.H.G.S.X.
0.3133.80.81At1g77420844079hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPFMVAO.I.H.G.S.X.
0.3032.10.79At5g02620831855ankyrin repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MOFBPVAO.I.H.G.S.X.
0.2830.30.79At5g09620830821octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.H.G.S.X.
0.2830.30.79At4g22580828354exostosin family proteinF:catalytic activity;P:unknown;C:endomembrane system, membrane;POMFO.I.H.G.S.X.
0.2830.30.79At3g27300822349G6PD5 (glucose-6-phosphate dehydrogenase 5)F:glucose-6-phosphate dehydrogenase activity;P:response to cadmium ion, pentose-phosphate shunt, oxidative branch, glucose metabolic process;C:cytosol, chloroplast;BOMPFVO.I.H.G.S.X.
0.2522.60.80At3g10410820205scpl49 (serine carboxypeptidase-like 49)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.H.G.S.X.
0.2420.70.81At1g19550838542dehydroascorbate reductase, putativeF:glutathione dehydrogenase (ascorbate) activity;P:unknown;C:unknown;MPBOFO.I.H.G.S.X.
0.2420.70.79At3g28050822429nodulin MtN21 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, membrane;PBOAFMO.I.H.G.S.X.
0.2319.30.80At2g41900818790zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVAO.I.H.G.S.X.
0.2319.30.79At1g01650839499aspartic-type endopeptidase/ peptidaseF:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system, integral to membrane;MOPBFO.I.H.G.S.X.
0.2319.30.79At3g29270822584ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.2319.30.82At4g29210829042GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism.O.I.H.G.S.X.
0.2319.30.79At4g33890829532unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.2217.50.79At1g48370841257YSL8 (YELLOW STRIPE LIKE 8)Arabidopsis thaliana metal-nicotianamine transporter YSL4O.I.H.G.S.X.
0.2217.50.80At4g29010829022AIM1 (ABNORMAL INFLORESCENCE MERISTEM)Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activitiesO.I.H.G.S.X.
0.2014.40.79At3g56740824841ubiquitin-associated (UBA)/TS-N domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOBO.I.H.G.S.X.
0.2014.40.79At1g54115841851CCX4 (CATION CALCIUM EXCHANGER 4)Involved in cation (Na and K) homeostasis.O.I.H.G.S.X.
0.2014.40.79At3g03740821170ATBPM4 (BTB-POZ and MATH domain 4)F:protein binding;P:biological_process unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.2014.40.79At4g38360829993unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.H.G.S.X.
0.2014.40.80At5g17010831564sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMOPAVO.I.H.G.S.X.
0.2014.40.79At5g43280834346ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1)Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.O.I.H.G.S.X.
0.1912.70.79At1g69980843335unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.H.G.S.X.
0.1912.70.80At5g18190831937protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.1912.70.80At5g44720834501molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMFOPAO.I.H.G.S.X.
0.1811.40.80At1g11840837731ATGLX1 (GLYOXALASE I HOMOLOG)Encodes a glyoxalase I homolog ATGLX1.O.I.H.G.S.X.
0.1811.40.79At5g66420836774-F:unknown;P:unknown;C:cellular_component unknown;BOFPAO.I.H.G.S.X.
0.1710.20.79At1g28340839730AtRLP4 (Receptor Like Protein 4)F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.H.G.S.X.
0.1710.20.79At5g20900832214JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.1710.20.82At2g24200816954cytosol aminopeptidaseF:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:response to cadmium ion, proteolysis;C:vacuole;OBMPFAO.I.H.G.S.X.
0.1710.20.79At5g37830833761OXP1 (OXOPROLINASE 1)Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.O.I.H.G.S.X.
0.1710.20.79At3g05090819671transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAVO.I.H.G.S.X.
0.1710.20.79At1g34190840318anac017 (Arabidopsis NAC domain containing protein 17)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POBO.I.H.G.S.X.
0.168.80.79At4g13270826957unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.157.80.80At4g36940829848NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1)F:nicotinate phosphoribosyltransferase activity;P:pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage;C:cellular_component unknown;BMOAPFO.I.H.G.S.X.
0.157.80.79At1g16010838171magnesium transporter CorA-like family protein (MRS2-1)F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBAO.I.H.G.S.X.
0.157.80.79At1g16710838242HAC12 (histone acetyltransferase of the CBP family 12)Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.O.I.H.G.S.X.
0.157.80.79At2g13560815842malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFAO.I.H.G.S.X.
0.146.80.79At1g18720838454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFOPO.I.H.G.S.X.
0.146.80.79At5g51340835208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.H.G.S.X.
0.146.80.79At3g17880821056ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.O.I.H.G.S.X.
0.146.80.79At4g34040829550zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVO.I.H.G.S.X.
0.146.80.79At4g35360829689pantothenate kinase family proteinF:pantothenate kinase activity;P:unknown;C:cellular_component unknown;MPBAOO.I.H.G.S.X.
0.146.80.80At5g65780836707ATBCAT-5encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutantO.I.H.G.S.X.
0.135.80.79At4g14710827122acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingF:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFOO.I.H.G.S.X.
0.135.80.79At2g47850819397zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFOBO.I.H.G.S.X.
0.124.90.79At3g33530823149transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:chloroplast;MOPFO.I.H.G.S.X.
0.124.90.79At3g25800822171PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)one of three genes encoding the protein phosphatase 2A regulatory subunitO.I.H.G.S.X.
0.124.90.80At3g62580825432-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPBO.I.H.G.S.X.
0.124.90.79At2g26770817218plectin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.114.10.79At4g05530825905IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.O.I.H.G.S.X.
0.114.10.79At3g09100820064mRNA capping enzyme family proteinF:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity;P:protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation;C:nucleus;MFOVPO.I.H.G.S.X.
0.103.40.79At1g48420841263D-CDES (D-CYSTEINE DESULFHYDRASE)Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity.O.I.H.G.S.X.
0.103.40.79At3g10260820188reticulon family proteinF:unknown;P:unknown;C:mitochondrion, endoplasmic reticulum;MPOO.I.H.G.S.X.
0.092.80.79At5g37310833705-F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plant-type cell wall;MPOFO.I.H.G.S.X.
0.040.90.79At4g32390829374phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.040.90.79At1g19580838545GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
66.799.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
60.699.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
54.799.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.999.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
52.199.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.099.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.699.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.299.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.099.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.199.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.399.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.899.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.399.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.399.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.499.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.999.7E-MEXP-1344-raw-cel-1559561563
28.299.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.299.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.599.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.499.5E-MEXP-1345-raw-cel-1559561139
16.699.5E-MEXP-1344-raw-cel-1559561683
16.499.5E-MEXP-1345-raw-cel-1559561199
15.899.5GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
15.299.4GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
14.899.4E-MEXP-1345-raw-cel-1559561229
14.799.4E-MEXP-1344-raw-cel-1559561593
14.699.4E-MEXP-1345-raw-cel-1559561169
14.199.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.599.4E-MEXP-1345-raw-cel-1559561289
12.999.3GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.999.3GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
12.799.3GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.799.3GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
12.599.3E-MEXP-1345-raw-cel-1559561259
12.199.3E-MEXP-1443-raw-cel-1581869573
11.099.2E-MEXP-1344-raw-cel-1559561623
10.699.2E-MEXP-1344-raw-cel-1559561653
10.199.2GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.399.1E-MEXP-1344-raw-cel-1559561713
9.199.1GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0662GO:0006751The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.Link to AmiGO
0.0341GO:0006805The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.Link to AmiGO
0.0341GO:0019358The generation of nicotinate nucleotide without de novo synthesis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.055300480Glutathione metabolismLink to KEGG PATHWAY
0.028100770Pantothenate and CoA biosynthesisLink to KEGG PATHWAY
0.026100966Glucosinolate biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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