CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g19120

Gene name ERD3 (early-responsive to dehydration 3)

Module size 29 genes

NF 0.40

%ile 56.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.74 86.1 1.00 At4g19120 827650 ERD3 (early-responsive to dehydration 3) F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF O.I. H.G. S.X.
0.57 73.8 0.79 At1g12750 837831 ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA O.I. H.G. S.X.
0.56 73.0 0.78 At5g64640 836585 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plasma membrane, plant-type cell wall;PBFOM O.I. H.G. S.X.
0.55 70.6 0.82 At1g18150 838394 ATMPK8 ATMPK8, O.I. H.G. S.X.
0.52 67.4 0.80 At3g24760 822074 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.51 66.3 0.75 At1g01500 839430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.48 62.5 0.76 At1g26130 839154 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:plasma membrane, chloroplast envelope;MBOFPAV O.I. H.G. S.X.
0.46 59.8 0.78 At1g61770 842474 DNAJ heat shock N-terminal domain-containing protein J domain protein. O.I. H.G. S.X.
0.45 58.3 0.75 At1g04985 839352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.44 57.2 0.77 At2g19450 816464 TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1) Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development. O.I. H.G. S.X.
0.44 57.2 0.78 At3g01040 821312 GAUT13 (Galacturonosyltransferase 13) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.42 53.9 0.77 At1g22200 838825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP O.I. H.G. S.X.
0.41 52.4 0.75 At1g79660 844305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.41 52.4 0.77 At4g26650 828772 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVA O.I. H.G. S.X.
0.40 50.8 0.78 At1g06890 837199 transporter-related F:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBA O.I. H.G. S.X.
0.39 48.4 0.77 At1g19110 838494 inter-alpha-trypsin inhibitor heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFA O.I. H.G. S.X.
0.39 48.4 0.77 At1g17290 838301 AlaAT1 (ALANINE AMINOTRANSFERAS) Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia O.I. H.G. S.X.
0.39 48.4 0.75 At1g15880 838158 GOS11 (golgi snare 11) Golgi SNARE 11 protein (GOS11) O.I. H.G. S.X.
0.37 45.0 0.80 At5g54310 835519 AGD5 (ARF-GAP domain 5) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. O.I. H.G. S.X.
0.36 43.6 0.78 At5g58950 836012 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA O.I. H.G. S.X.
0.35 41.6 0.77 At5g15470 831400 GAUT14 (Galacturonosyltransferase 14) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.33 38.1 0.76 At1g14560 838018 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPO O.I. H.G. S.X.
0.32 35.7 0.77 At2g31800 817737 ankyrin protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA O.I. H.G. S.X.
0.32 35.7 0.76 At4g35790 829733 ATPLDDELTA Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death. O.I. H.G. S.X.
0.32 35.7 0.77 At3g47080 823861 binding F:binding;P:unknown;C:unknown;PBOAM O.I. H.G. S.X.
0.31 33.8 0.77 At5g23670 832432 LCB2 Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. O.I. H.G. S.X.
0.31 33.8 0.78 At1g65430 842854 zinc finger protein-related F:ubiquitin-protein ligase activity;P:unknown;C:intracellular;MOPFV O.I. H.G. S.X.
0.30 32.1 0.79 At3g61580 825331 delta-8 sphingolipid desaturase (SLD1) F:oxidoreductase activity, sphingolipid delta-4 desaturase activity;P:lipid metabolic process;C:unknown;FMOPBVA O.I. H.G. S.X.
0.27 26.2 0.78 At1g69330 843265 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPO O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.74	86.1	1.00	At4g19120	827650	ERD3 (early-responsive to dehydration 3)	F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF	O.I.	H.G.	S.X.
0.57	73.8	0.79	At1g12750	837831	ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA	O.I.	H.G.	S.X.
0.56	73.0	0.78	At5g64640	836585	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plasma membrane, plant-type cell wall;PBFOM	O.I.	H.G.	S.X.
0.55	70.6	0.82	At1g18150	838394	ATMPK8	ATMPK8,	O.I.	H.G.	S.X.
0.52	67.4	0.80	At3g24760	822074	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.51	66.3	0.75	At1g01500	839430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.48	62.5	0.76	At1g26130	839154	haloacid dehalogenase-like hydrolase family protein	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:plasma membrane, chloroplast envelope;MBOFPAV	O.I.	H.G.	S.X.
0.46	59.8	0.78	At1g61770	842474	DNAJ heat shock N-terminal domain-containing protein	J domain protein.	O.I.	H.G.	S.X.
0.45	58.3	0.75	At1g04985	839352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	0.77	At2g19450	816464	TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1)	Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development.	O.I.	H.G.	S.X.
0.44	57.2	0.78	At3g01040	821312	GAUT13 (Galacturonosyltransferase 13)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	H.G.	S.X.
0.42	53.9	0.77	At1g22200	838825	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP	O.I.	H.G.	S.X.
0.41	52.4	0.75	At1g79660	844305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.41	52.4	0.77	At4g26650	828772	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVA	O.I.	H.G.	S.X.
0.40	50.8	0.78	At1g06890	837199	transporter-related	F:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBA	O.I.	H.G.	S.X.
0.39	48.4	0.77	At1g19110	838494	inter-alpha-trypsin inhibitor heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFA	O.I.	H.G.	S.X.
0.39	48.4	0.77	At1g17290	838301	AlaAT1 (ALANINE AMINOTRANSFERAS)	Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia	O.I.	H.G.	S.X.
0.39	48.4	0.75	At1g15880	838158	GOS11 (golgi snare 11)	Golgi SNARE 11 protein (GOS11)	O.I.	H.G.	S.X.
0.37	45.0	0.80	At5g54310	835519	AGD5 (ARF-GAP domain 5)	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	O.I.	H.G.	S.X.
0.36	43.6	0.78	At5g58950	836012	protein kinase family protein	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA	O.I.	H.G.	S.X.
0.35	41.6	0.77	At5g15470	831400	GAUT14 (Galacturonosyltransferase 14)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	H.G.	S.X.
0.33	38.1	0.76	At1g14560	838018	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPO	O.I.	H.G.	S.X.
0.32	35.7	0.77	At2g31800	817737	ankyrin protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA	O.I.	H.G.	S.X.
0.32	35.7	0.76	At4g35790	829733	ATPLDDELTA	Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.	O.I.	H.G.	S.X.
0.32	35.7	0.77	At3g47080	823861	binding	F:binding;P:unknown;C:unknown;PBOAM	O.I.	H.G.	S.X.
0.31	33.8	0.77	At5g23670	832432	LCB2	Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.	O.I.	H.G.	S.X.
0.31	33.8	0.78	At1g65430	842854	zinc finger protein-related	F:ubiquitin-protein ligase activity;P:unknown;C:intracellular;MOPFV	O.I.	H.G.	S.X.
0.30	32.1	0.79	At3g61580	825331	delta-8 sphingolipid desaturase (SLD1)	F:oxidoreductase activity, sphingolipid delta-4 desaturase activity;P:lipid metabolic process;C:unknown;FMOPBVA	O.I.	H.G.	S.X.
0.27	26.2	0.78	At1g69330	843265	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPO	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
107.7 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
63.3 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
54.9 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.5 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.8 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.7 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.8 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.2 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.0 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.9 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.9 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.7 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.7 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.2 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.0 99.8 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
40.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.9 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.6 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.4 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.0 99.7 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
32.9 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.3 99.7 E-MEXP-1443-raw-cel-1581869515
29.2 99.7 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
29.1 99.7 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.7 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.6 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.2 99.6 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
23.7 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.7 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.3 99.6 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
23.2 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.9 99.6 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
21.6 99.6 E-MEXP-1443-raw-cel-1581869573
17.2 99.5 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
16.7 99.5 GSM158702 HY213-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
13.3 99.4 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.9 99.3 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.8 99.3 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.3 99.3 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
11.2 99.2 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.5 99.2 E-MEXP-285-raw-cel-440782725
10.3 99.2 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.9 99.1 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.7 99.1 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.6 99.1 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.2 99.1 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.1 99.1 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
107.7	99.9	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
63.3	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
54.9	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.5	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.8	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
47.7	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.8	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
44.2	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.0	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.9	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.1	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.9	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
42.7	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.7	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.2	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.0	99.8	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
40.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.9	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.6	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.4	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.0	99.7	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
32.9	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.3	99.7	E-MEXP-1443-raw-cel-1581869515
29.2	99.7	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
29.1	99.7	GSM133774	Lindsey_1-26_torpedo-meristem_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.7	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.6	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.2	99.6	GSM284396	Arabidopsis GPSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
23.7	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.7	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.3	99.6	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
23.2	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.9	99.6	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
21.6	99.6	E-MEXP-1443-raw-cel-1581869573
17.2	99.5	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
16.7	99.5	GSM158702	HY213-ESTRADIOL-REP1	GSE6954	Identification of AGL24 downstream genes by using XVE inducible system
13.3	99.4	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.9	99.3	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.8	99.3	GSM133760	Lindsey_1-12_heart-stage-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.3	99.3	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
11.2	99.2	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.5	99.2	E-MEXP-285-raw-cel-440782725
10.3	99.2	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.9	99.1	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.7	99.1	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.6	99.1	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.2	99.1	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.1	99.1	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.067 1 GO:0019481 The chemical reactions and pathways resulting in the breakdown of L-alanine by transamination.
0.067 1 GO:0032857 Any process that initiates the activity of the inactive enzyme ARF GTPase through the replacement of GDP by GTP.
0.067 1 GO:0046473 The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids.

SF	Genes	GO ID	Process Name
0.067	1	GO:0019481	The chemical reactions and pathways resulting in the breakdown of L-alanine by transamination.
0.067	1	GO:0032857	Any process that initiates the activity of the inactive enzyme ARF GTPase through the replacement of GDP by GTP.
0.067	1	GO:0046473	The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.051 1 00600 Sphingolipid metabolism
0.029 1 00250 Alanine, aspartate and glutamate metabolism
0.026 1 04130 SNARE interactions in vesicular transport

SF	Genes	KEGG ID	Pathway name
0.051	1	00600	Sphingolipid metabolism
0.029	1	00250	Alanine, aspartate and glutamate metabolism
0.026	1	04130	SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At4g19120
Gene name	ERD3 (early-responsive to dehydration 3)
Module size	29 genes
NF	0.40
%ile	56.1

Co-expression analysis

Gene ID At4g19120 Gene name ERD3 (early-responsive to dehydration 3) Module size 29 genes NF 0.40 %ile 56.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.051100600Sphingolipid metabolism0.029100250Alanine, aspartate and glutamate metabolism0.026104130SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At4g19120

Gene name ERD3 (early-responsive to dehydration 3)

Module size 29 genes

NF 0.40

%ile 56.1

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.051 1 00600 Sphingolipid metabolism
0.029 1 00250 Alanine, aspartate and glutamate metabolism
0.026 1 04130 SNARE interactions in vesicular transport

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays