Co-expression analysis

Gene ID At4g18340
Gene name glycosyl hydrolase family 17 protein
Module size 68 genes
NF 0.88
%ile 97.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8290.91.00At4g18340827561glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.H.G.S.X.
0.9296.00.72At2g39830818570DAR2 (DA1-RELATED PROTEIN 2)F:zinc ion binding;P:unknown;C:chloroplast;MOPFBO.I.H.G.S.X.
0.9195.60.74At1g63310842637-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9195.60.69At5g49320834992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9195.60.74At1g06490837160ATGSL07 (glucan synthase-like 7)encodes a gene similar to callose synthaseO.I.H.G.S.X.
0.9095.10.76At1g02950838240ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.H.G.S.X.
0.9095.10.70At3g18670821398ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPBFAVO.I.H.G.S.X.
0.9095.10.76At4g35970829751APX5 (ASCORBATE PEROXIDASE 5)Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.O.I.H.G.S.X.
0.9095.10.69At5g38070833787zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.9095.10.72At3g13590820561DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POO.I.H.G.S.X.
0.9095.10.72At3g17380821002meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.9095.10.70At5g45320834568-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9095.10.70At2g34530818016unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9095.10.68At4g16640827365matrix metalloproteinase, putativeF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFAO.I.H.G.S.X.
0.9095.10.70At5g04310830310pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.H.G.S.X.
0.9095.10.73At5g20870832210glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.H.G.S.X.
0.9095.10.72At4g21310827879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9095.10.69At5g48690834927-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.9095.10.71At5g56720835773malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFAO.I.H.G.S.X.
0.9095.10.69At5g67050836840lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMVO.I.H.G.S.X.
0.8994.60.71At3g18260821354reticulon family protein (RTNLB9)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFO.I.H.G.S.X.
0.8994.60.72At5g03510831818zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOO.I.H.G.S.X.
0.8994.60.69At5g04890830370RTM2 (RESTRICTED TEV MOVEMENT 2)Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).O.I.H.G.S.X.
0.8994.60.70At1g05760837084RTM1 (restricted tev movement 1)Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistanceO.I.H.G.S.X.
0.8994.60.76At1g29520839829AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;PO.I.H.G.S.X.
0.8994.60.72At1g73370843672SUS6 (SUCROSE SYNTHASE 6)Encodes a protein with sucrose synthase activity (SUS6).O.I.H.G.S.X.
0.8994.60.69At1g11570837700nuclear transport factor 2 (NTF2), putativeF:protein transporter activity;P:transport, protein import into nucleus;C:nucleus, intracellular;MFPOO.I.H.G.S.X.
0.8994.60.68At1g11915837741unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8994.60.71At3g47180823871zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.H.G.S.X.
0.8994.60.68At1g61760842473harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.8994.60.75At1g68230843152reticulon family protein (RTNLB14)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.8994.60.74At2g466303768746unknown proteinF:unknown;P:unknown;C:chloroplastO.I.H.G.S.X.
0.8994.60.67At3g10680820237heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAO.I.H.G.S.X.
0.8994.60.69At3g15800820823glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POO.I.H.G.S.X.
0.8994.60.69At4g24250828526MLO13 (MILDEW RESISTANCE LOCUS O 13)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.H.G.S.X.
0.8994.60.69At5g48060834858C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.8994.60.73At1g10460837586GLP7 (GERMIN-LIKE PROTEIN 7)germin-like protein (GLP7)O.I.H.G.S.X.
0.8994.60.71At2g41200818719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8994.60.70At3g03200821226anac045 (Arabidopsis NAC domain containing protein 45)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMBO.I.H.G.S.X.
0.8894.00.66At1g05610837066APS2 (ADP-glucose pyrophoshorylase small subunit 2)Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.O.I.H.G.S.X.
0.8894.00.73At5g11990831072proline-rich family proteinF:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVAO.I.H.G.S.X.
0.8894.00.72At1g77700844106pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOVO.I.H.G.S.X.
0.8894.00.70At2g27140817256heat shock family proteinF:molecular_function unknown;P:response to heat;C:membrane;PBOMO.I.H.G.S.X.
0.8894.00.66At3g58350825004meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.H.G.S.X.
0.8894.00.67At5g25370832609PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.O.I.H.G.S.X.
0.8894.00.72At5g37180833692SUS5Encodes a protein with sucrose synthase activity (SUS5).O.I.H.G.S.X.
0.8894.00.72At1g65910842903anac028 (Arabidopsis NAC domain containing protein 28)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POMO.I.H.G.S.X.
0.8894.00.71At1g13920837952remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.H.G.S.X.
0.8894.00.71At1g31200840008ATPP2-A9 (Phloem protein 2-A9)F:carbohydrate binding;P:unknown;C:unknown;PO.I.H.G.S.X.
0.8894.00.72At2g18380816353transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOO.I.H.G.S.X.
0.8894.00.66At5g04680830346-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.8793.50.71At2g41300818729strictosidine synthaseF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOAO.I.H.G.S.X.
0.8793.50.67At4g37445829899-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.50.68At5g38770833868AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.50.72At1g62045842500-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.50.66At4g16400827334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.50.66At5g01480831674DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.8793.50.69At1g54330841874ANAC020 (Arabidopsis NAC domain containing protein 20)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.8693.10.67At4g33490829486aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMFO.I.H.G.S.X.
0.8592.40.74At2g15310816020ATARFB1A (ADP-ribosylation factor B1A)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.O.I.H.G.S.X.
0.8491.90.72At2g34540818017unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.8491.90.71At1g75720843906unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.8391.40.69At2g32280817788unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8290.90.77At5g03530831810RABC2A (RAB GTPASE HOMOLOG C2A)Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.O.I.H.G.S.X.
0.8190.40.71At5g26190832688DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;POMO.I.H.G.S.X.
0.8190.40.74At5g07710830664exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOPO.I.H.G.S.X.
0.8190.40.71At3g26350822239-F:unknown;P:unknown;C:chloroplast;MPFOVBAO.I.H.G.S.X.
0.6982.90.71At3g05620819728pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
84.899.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
69.699.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
64.599.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.499.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
38.899.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.599.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.099.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.599.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.399.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.099.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.599.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.799.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.499.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.399.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.099.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.399.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
24.999.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.899.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.299.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.299.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.899.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.199.6GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
22.099.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.499.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.199.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.199.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.299.5GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.799.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.899.5GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.199.4GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
14.699.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.499.4GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
12.599.3GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
12.499.3GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
12.299.3GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0532GO:0005985The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.Link to AmiGO
0.0502GO:0005986The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside.Link to AmiGO
0.0452GO:0009615A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.033200480Glutathione metabolismLink to KEGG PATHWAY
0.024100565Ether lipid metabolismLink to KEGG PATHWAY
0.023100980Metabolism of xenobiotics by cytochrome P450Link to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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