Co-expression analysis

Gene ID At4g17310
Gene name unknown protein
Module size 91 genes
NF 0.31
%ile 39.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g17310827444unknown proteinF:unknown;P:unknown;C:chloroplast;PO.I.H.G.S.X.
0.5267.40.90At5g19630832083unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAFO.I.H.G.S.X.
0.5166.30.90At2g25310817069carbohydrate bindingF:carbohydrate binding;P:biological_process unknown;C:endomembrane system;MFPOBO.I.H.G.S.X.
0.4963.50.90At5g18250831943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.4963.50.91At3g15040820733unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.4862.50.90At5g08320830728unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.4659.80.90At3g29350822593AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2)Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.H.G.S.X.
0.4457.20.91At5g20120832134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.4253.90.91At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.4253.90.90At1g01230839331ORMDL family proteinF:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.4253.90.90At1g23490838957ATARF1 (ADP-RIBOSYLATION FACTOR 1)Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.4152.40.90At2g43945818999unknown proteinF:unknown;P:unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.4152.40.91At4g26240828730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.4050.80.89At2g39840818571TOPP4Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.O.I.H.G.S.X.
0.3948.40.91At1g70490843385ARFA1DA member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.3948.40.90At3g20310821575ERF7 (ETHYLINE RESPONSE FACTOR 7)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box–mediated transcription together with AtSin3 and HDA19.O.I.H.G.S.X.
0.3846.70.91At4g16566827357histidine triad family protein / HIT family proteinF:nucleotide binding, catalytic activity;P:nucleotide metabolic process;C:peroxisome;BOMFAPO.I.H.G.S.X.
0.3846.70.90At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.3846.70.89At4g26710828778ATP synthase subunit H family proteinF:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOFO.I.H.G.S.X.
0.3846.70.90At5g53330835414-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.3846.70.90At3g22425821812IGPDEncodes imidazoleglycerolphosphate dehydratase.O.I.H.G.S.X.
0.3745.00.91At3g13550820557FUS9 (FUSCA 9)Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.O.I.H.G.S.X.
0.3745.00.89At2g41530818751SFGH (S-FORMYLGLUTATHIONE HYDROLASE)Encodes a protein with S-formylglutathione hydrolase activity.O.I.H.G.S.X.
0.3745.00.90At2g36680818240-F:unknown;P:unknown;C:ESCRT I complex;MOPFBAO.I.H.G.S.X.
0.3745.00.89At5g53530835435VPS26A (VACUOLAR PROTEIN SORTING 26A)Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.O.I.H.G.S.X.
0.3643.60.90At5g59880836110ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)Encodes actin depolymerizing factor 3 (ADF3).O.I.H.G.S.X.
0.3643.60.90At1g24350839051-F:unknown;P:biological_process unknown;C:unknown;BOPO.I.H.G.S.X.
0.3643.60.89At1g69640843300SBH1 (SPHINGOID BASE HYDROXYLASE 1)Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.O.I.H.G.S.X.
0.3541.60.89At1g78890844226unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3541.60.89At3g52760824442integral membrane Yip1 family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOPO.I.H.G.S.X.
0.3541.60.92At4g05000825842VPS28-2F:transporter activity;P:transport;C:ESCRT I complex;MFPOO.I.H.G.S.X.
0.3541.60.91At1g79975--O.I.H.G.S.X.
0.3439.80.89At2g30330817583GCN5L1 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.3439.80.90At5g10870830954ATCM2 (chorismate mutase 2)Encodes chorismate mutase AtCM2.O.I.H.G.S.X.
0.3439.80.89At3g57090824876BIGYINEncodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.O.I.H.G.S.X.
0.3439.80.90At5g07370830628IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA)Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphateO.I.H.G.S.X.
0.3439.80.89At2g28370817385-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.3338.10.91At3g05280819692integral membrane Yip1 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.3338.10.89At1g15370838106-F:molecular_function unknown;P:transport;C:unknown;POFO.I.H.G.S.X.
0.3338.10.89At1g73030843634VPS46.2F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.3338.10.90At2g40410818634Ca(2+)-dependent nuclease, putativeF:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.
0.3338.10.89At1g29040839778unknown proteinF:unknown;P:unknown;C:chloroplast, vacuole;BOPO.I.H.G.S.X.
0.3338.10.90At3g13410820541unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.3338.10.89At5g10700830935aminoacyl-tRNA hydrolase/ protein tyrosine phosphataseF:aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation, translation;C:unknown;MOPFO.I.H.G.S.X.
0.3235.70.89At5g16550831517unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.3235.70.89At5g54540835542-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.3235.70.90At1g48170841236unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.3235.70.90At2g31710817727unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3235.70.90At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsO.I.H.G.S.X.
0.3235.70.90At1g16890838260ubiquitin-conjugating enzyme, putativeUBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.O.I.H.G.S.X.
0.3133.80.89At4g32680829403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3032.10.90At3g48750824036CDC2 (CELL DIVISION CONTROL 2)A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.O.I.H.G.S.X.
0.3032.10.89At1g14400838002UBC1 (UBIQUITIN CARRIER PROTEIN 1)ubiquitin carrier proteinO.I.H.G.S.X.
0.3032.10.89At3g57785824948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFMO.I.H.G.S.X.
0.3032.10.90At1g31940840084unknown proteinF:unknown;P:unknown;C:plasma membrane;PO.I.H.G.S.X.
0.2930.30.89At1g60430842338ARPC3 (actin-related protein C3)F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOPO.I.H.G.S.X.
0.2930.30.90At1g10430837583PP2A-2Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.O.I.H.G.S.X.
0.2930.30.90At3g03070821133NADH-ubiquinone oxidoreductase-relatedF:unknown;P:unknown;C:mitochondrion;MFPOO.I.H.G.S.X.
0.2830.30.90At2g44525819060unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMOFPO.I.H.G.S.X.
0.2830.30.90At2g19790816498clathrin adaptor complex small chain family proteinF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MOFPO.I.H.G.S.X.
0.2726.20.89At1g72175843549zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBVO.I.H.G.S.X.
0.2726.20.89At5g02040831904PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPFO.I.H.G.S.X.
0.2726.20.90At2g47170819330ARF1A1CGene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.2726.20.90At4g15520827225tRNA/rRNA methyltransferase (SpoU) family proteinF:RNA binding, RNA methyltransferase activity;P:RNA processing;C:cellular_component unknown;BOMPAO.I.H.G.S.X.
0.2726.20.89At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.2624.40.89At1g35160840403GF14 PHI (GF14 PROTEIN PHI CHAIN)GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.2624.40.90At3g10620820231ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)F:bis(5'-adenosyl)-pentaphosphatase activity, bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.2522.60.89At1g68070843135zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.2522.60.90At3g24030821988hydroxyethylthiazole kinase family proteinF:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPMO.I.H.G.S.X.
0.2522.60.89At1g02140837560MAGO (MAGO NASHI)F:protein binding;P:embryonic development ending in seed dormancy, pollen tube guidance, sex determination;C:in 6 components;MFOPO.I.H.G.S.X.
0.2522.60.89At1g30825839965DIS2 (DISTORTED TRICHOMES 2)Involved in trichome maturation. mutant displays enlarged trichomesO.I.H.G.S.X.
0.2522.60.89At4g38920830047ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPAO.I.H.G.S.X.
0.2522.60.91At3g01340821216protein transport protein SEC13 family protein / WD-40 repeat family proteinF:nucleotide binding;P:intracellular protein transport, membrane budding;C:cellular_component unknown;MFBOPAO.I.H.G.S.X.
0.2522.60.89At1g08970837417NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)heme activated protein (HAP5c)O.I.H.G.S.X.
0.2522.60.89At2g42670818867unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.2522.60.89At5g47310834778unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2420.70.89At1g80950844435phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPFO.I.H.G.S.X.
0.2420.70.89At5g40810834081cytochrome c1, putativeF:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:mitochondrial respiratory chain, mitochondrion, vacuole, mitochondrial respiratory chain complex III, membrane;OBMFPO.I.H.G.S.X.
0.2319.30.90At5g64813836603LIP1 (Light Insensitive Period1)The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.O.I.H.G.S.X.
0.2319.30.90At1g76940844029RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOO.I.H.G.S.X.
0.2217.50.89At4g39990830160RABA4B (RAB GTPASE HOMOLOG A4B)GTP-binding protein ATGB3O.I.H.G.S.X.
0.2217.50.90At5g20500832172glutaredoxin, putativeF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;BOPMFVAO.I.H.G.S.X.
0.2217.50.89At1g50170841439ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesisO.I.H.G.S.X.
0.2014.40.89At1g21720838776PBC1 (PROTEASOME BETA SUBUNIT C1)20S proteasome beta subunit PBC1 truncated protein (PBC1)O.I.H.G.S.X.
0.2014.40.90At3g42050823170vacuolar ATP synthase subunit H family proteinF:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOPO.I.H.G.S.X.
0.1912.70.89At3g04830819643bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFBAPO.I.H.G.S.X.
0.1912.70.89At4g37830829939cytochrome c oxidase-relatedF:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPOO.I.H.G.S.X.
0.1710.20.89At3g15660820809GRX4 (GLUTAREDOXIN 4)F:metal ion binding;P:cell redox homeostasis;C:mitochondrion;OBMPFAO.I.H.G.S.X.
0.1710.20.90At3g04970819657zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.1710.20.90At3g58470825016methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.168.80.90At3g01150821129PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.999.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.899.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.099.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.199.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.099.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.499.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.099.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.999.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.999.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.399.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.299.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.599.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.099.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.699.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.199.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.499.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.599.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
23.799.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.899.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.499.6E-MEXP-807-raw-cel-1173273060
20.999.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.499.6E-MEXP-807-raw-cel-1173273170
19.999.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
19.399.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.399.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.299.5E-MEXP-807-raw-cel-1173273116
16.999.5E-MEXP-807-raw-cel-1173273252
16.699.5E-MEXP-807-raw-cel-1173273144
16.299.5E-MEXP-807-raw-cel-1173273223
13.699.4GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.199.4E-MEXP-807-raw-cel-1173273088
9.299.1E-MEXP-807-raw-cel-1173273196

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0392GO:0007015A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.Link to AmiGO
0.0332GO:0009846The physiological and developmental changes that occur in a heterosporous plant pollen grain, beginning with hydration and terminating with the emergence of the pollen tube through the aperture.Link to AmiGO
0.0324GO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.034400190Oxidative phosphorylationLink to KEGG PATHWAY
0.026204144EndocytosisLink to KEGG PATHWAY
0.021204120Ubiquitin mediated proteolysisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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