CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g17090

Gene name CT-BMY (CHLOROPLAST BETA-AMYLASE)

Module size 45 genes

NF 0.20

%ile 19.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). O.I. H.G. S.X.
0.41 52.4 0.75 At4g18810 827615 binding / catalytic/ transcription repressor F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM O.I. H.G. S.X.
0.40 50.8 0.73 At4g39800 830139 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) ** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. H.G. S.X.
0.36 43.6 0.75 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. H.G. S.X.
0.34 39.8 0.71 At3g25690 822157 CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) actin binding protein required for normal chloroplast positioning O.I. H.G. S.X.
0.31 33.8 0.73 At1g62750 842573 SCO1 (SNOWY COTYLEDON 1) Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. O.I. H.G. S.X.
0.31 33.8 0.72 At1g01790 837332 KEA1 (K EFFLUX ANTIPORTER 1) K efflux antiporter KEA1 O.I. H.G. S.X.
0.31 33.8 0.72 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV O.I. H.G. S.X.
0.31 33.8 0.71 At5g10470 830911 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAV O.I. H.G. S.X.
0.31 33.8 0.72 At5g42310 834236 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:chloroplast;POMFBA O.I. H.G. S.X.
0.31 33.8 0.71 At4g33010 829438 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) F:glycine dehydrogenase (decarboxylating) activity, pyridoxal phosphate binding, catalytic activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:mitochondrion, apoplast, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMP O.I. H.G. S.X.
0.31 33.8 0.71 At4g27820 828895 BGLU9 (BETA GLUCOSIDASE 9) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA O.I. H.G. S.X.
0.29 30.3 0.75 At5g13650 831209 elongation factor family protein F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.29 30.3 0.70 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. H.G. S.X.
0.28 30.3 0.70 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. H.G. S.X.
0.27 26.2 0.72 At4g31390 829266 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBPMFAV O.I. H.G. S.X.
0.27 26.2 0.71 At5g60600 836181 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP⁺ reductase. O.I. H.G. S.X.
0.26 24.4 0.75 At1g79510 844289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. H.G. S.X.
0.26 24.4 0.70 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. H.G. S.X.
0.26 24.4 0.73 At4g32190 829352 centromeric protein-related F:unknown;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.26 24.4 0.70 At2g24820 817019 TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55) F:electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding;P:oxidation reduction;C:chloroplast, chloroplast envelope;BOPMFA O.I. H.G. S.X.
0.25 22.6 0.71 At3g11670 820339 DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1) Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE). O.I. H.G. S.X.
0.25 22.6 0.73 At4g02920 828139 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.24 20.7 0.72 At3g21760 821730 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF O.I. H.G. S.X.
0.23 19.3 0.71 At2g42600 818860 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. O.I. H.G. S.X.
0.23 19.3 0.71 At1g01420 837503 UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3) F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. H.G. S.X.
0.22 17.5 0.70 At5g08650 830766 GTP-binding protein LepA, putative F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPA O.I. H.G. S.X.
0.22 17.5 0.70 At5g17230 831587 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase Encodes phytoene synthase. O.I. H.G. S.X.
0.22 17.5 0.71 At5g42270 834232 VAR1 (VARIEGATED 1) VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes. O.I. H.G. S.X.
0.22 17.5 0.70 At3g03770 821164 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.20 14.4 0.70 At1g52870 841720 peroxisomal membrane protein-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MPFO O.I. H.G. S.X.
0.20 14.4 0.70 At4g02260 828096 RSH1 (RELA-SPOT HOMOLOG 1) F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFV O.I. H.G. S.X.
0.19 12.7 0.70 At5g19220 832042 APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1) Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. O.I. H.G. S.X.
0.16 8.8 0.71 At3g54050 824572 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative F:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFA O.I. H.G. S.X.
0.16 8.8 0.73 At2g29630 817513 THIC (ThiaminC) Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene. O.I. H.G. S.X.
0.16 8.8 0.70 At4g37930 829949 SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants. O.I. H.G. S.X.
0.14 6.8 0.70 At4g18390 827568 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. H.G. S.X.
0.14 6.8 0.70 At1g32060 840098 PRK (PHOSPHORIBULOKINASE) F:protein binding, phosphoribulokinase activity, ATP binding;P:response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process;C:in 8 components;BPOMFAV O.I. H.G. S.X.
0.12 4.9 0.73 At4g04770 825814 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast. O.I. H.G. S.X.
0.11 4.1 0.70 At1g71710 843501 inositol polyphosphate 5-phosphatase, putative F:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOV O.I. H.G. S.X.
0.10 3.4 0.71 At4g21210 827869 ATRP1 (PPDK REGULATORY PROTEIN) Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase). O.I. H.G. S.X.
0.09 2.8 0.70 At5g48300 834883 ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1) Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested. O.I. H.G. S.X.
0.09 2.8 0.72 At4g27520 828861 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVA O.I. H.G. S.X.
0.09 2.8 0.73 At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. O.I. H.G. S.X.
0.05 1.1 0.72 At2g28900 817439 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	O.I.	H.G.	S.X.
0.41	52.4	0.75	At4g18810	827615	binding / catalytic/ transcription repressor	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM	O.I.	H.G.	S.X.
0.40	50.8	0.73	At4g39800	830139	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	H.G.	S.X.
0.36	43.6	0.75	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	H.G.	S.X.
0.34	39.8	0.71	At3g25690	822157	CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)	actin binding protein required for normal chloroplast positioning	O.I.	H.G.	S.X.
0.31	33.8	0.73	At1g62750	842573	SCO1 (SNOWY COTYLEDON 1)	Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.	O.I.	H.G.	S.X.
0.31	33.8	0.72	At1g01790	837332	KEA1 (K EFFLUX ANTIPORTER 1)	K efflux antiporter KEA1	O.I.	H.G.	S.X.
0.31	33.8	0.72	At1g07010	837211	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV	O.I.	H.G.	S.X.
0.31	33.8	0.71	At5g10470	830911	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAV	O.I.	H.G.	S.X.
0.31	33.8	0.72	At5g42310	834236	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:chloroplast;POMFBA	O.I.	H.G.	S.X.
0.31	33.8	0.71	At4g33010	829438	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	F:glycine dehydrogenase (decarboxylating) activity, pyridoxal phosphate binding, catalytic activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:mitochondrion, apoplast, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMP	O.I.	H.G.	S.X.
0.31	33.8	0.71	At4g27820	828895	BGLU9 (BETA GLUCOSIDASE 9)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA	O.I.	H.G.	S.X.
0.29	30.3	0.75	At5g13650	831209	elongation factor family protein	F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast, chloroplast stroma;BOMFPA	O.I.	H.G.	S.X.
0.29	30.3	0.70	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	H.G.	S.X.
0.28	30.3	0.70	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	H.G.	S.X.
0.27	26.2	0.72	At4g31390	829266	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBPMFAV	O.I.	H.G.	S.X.
0.27	26.2	0.71	At5g60600	836181	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP⁺ reductase.	O.I.	H.G.	S.X.
0.26	24.4	0.75	At1g79510	844289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	H.G.	S.X.
0.26	24.4	0.70	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	H.G.	S.X.
0.26	24.4	0.73	At4g32190	829352	centromeric protein-related	F:unknown;P:unknown;C:unknown;MOBFPAV	O.I.	H.G.	S.X.
0.26	24.4	0.70	At2g24820	817019	TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55)	F:electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding;P:oxidation reduction;C:chloroplast, chloroplast envelope;BOPMFA	O.I.	H.G.	S.X.
0.25	22.6	0.71	At3g11670	820339	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).	O.I.	H.G.	S.X.
0.25	22.6	0.73	At4g02920	828139	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.24	20.7	0.72	At3g21760	821730	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF	O.I.	H.G.	S.X.
0.23	19.3	0.71	At2g42600	818860	ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.	O.I.	H.G.	S.X.
0.23	19.3	0.71	At1g01420	837503	UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)	F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	H.G.	S.X.
0.22	17.5	0.70	At5g08650	830766	GTP-binding protein LepA, putative	F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPA	O.I.	H.G.	S.X.
0.22	17.5	0.70	At5g17230	831587	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	Encodes phytoene synthase.	O.I.	H.G.	S.X.
0.22	17.5	0.71	At5g42270	834232	VAR1 (VARIEGATED 1)	VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes.	O.I.	H.G.	S.X.
0.22	17.5	0.70	At3g03770	821164	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.20	14.4	0.70	At1g52870	841720	peroxisomal membrane protein-related	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MPFO	O.I.	H.G.	S.X.
0.20	14.4	0.70	At4g02260	828096	RSH1 (RELA-SPOT HOMOLOG 1)	F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFV	O.I.	H.G.	S.X.
0.19	12.7	0.70	At5g19220	832042	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.	O.I.	H.G.	S.X.
0.16	8.8	0.71	At3g54050	824572	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	F:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFA	O.I.	H.G.	S.X.
0.16	8.8	0.73	At2g29630	817513	THIC (ThiaminC)	Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.	O.I.	H.G.	S.X.
0.16	8.8	0.70	At4g37930	829949	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.	O.I.	H.G.	S.X.
0.14	6.8	0.70	At4g18390	827568	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	H.G.	S.X.
0.14	6.8	0.70	At1g32060	840098	PRK (PHOSPHORIBULOKINASE)	F:protein binding, phosphoribulokinase activity, ATP binding;P:response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process;C:in 8 components;BPOMFAV	O.I.	H.G.	S.X.
0.12	4.9	0.73	At4g04770	825814	ATABC1 (ATP BINDING CASSETTE PROTEIN 1)	Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.	O.I.	H.G.	S.X.
0.11	4.1	0.70	At1g71710	843501	inositol polyphosphate 5-phosphatase, putative	F:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOV	O.I.	H.G.	S.X.
0.10	3.4	0.71	At4g21210	827869	ATRP1 (PPDK REGULATORY PROTEIN)	Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).	O.I.	H.G.	S.X.
0.09	2.8	0.70	At5g48300	834883	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.	O.I.	H.G.	S.X.
0.09	2.8	0.72	At4g27520	828861	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVA	O.I.	H.G.	S.X.
0.09	2.8	0.73	At2g35960	818169	NHL12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	O.I.	H.G.	S.X.
0.05	1.1	0.72	At2g28900	817439	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.8 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.8 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.4 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.8 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
50.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.8 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.1 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.9 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.6 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.2 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.3 99.8 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
37.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.1 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
36.0 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.5 99.7 E-ATMX-35-raw-cel-1574334800
27.4 99.7 E-ATMX-35-raw-cel-1574334832
27.0 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.3 99.7 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
23.9 99.6 E-ATMX-35-raw-cel-1574334816
23.6 99.6 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
23.1 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.2 99.6 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
21.5 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
20.0 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.9 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.8 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.5 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.5 99.6 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
17.3 99.5 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.1 99.5 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
15.1 99.4 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
14.8 99.4 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.7 99.4 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
13.3 99.4 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.7 99.3 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.2 99.2 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.4 99.2 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.9 99.1 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.9 99.0 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
8.6 99.0 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
54.8	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.8	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.0	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.4	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
50.8	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
50.8	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.8	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.1	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.9	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.7	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.6	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.2	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.2	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.3	99.8	GSM270870	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
37.7	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.1	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
36.0	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.5	99.7	E-ATMX-35-raw-cel-1574334800
27.4	99.7	E-ATMX-35-raw-cel-1574334832
27.0	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.3	99.7	GSM270868	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
23.9	99.6	E-ATMX-35-raw-cel-1574334816
23.6	99.6	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
23.1	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.2	99.6	GSM311285	Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
21.5	99.6	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
20.0	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.9	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.8	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.5	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
19.5	99.6	GSM311286	Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
17.3	99.5	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.1	99.5	GSM311284	Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
15.1	99.4	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
14.8	99.4	GSM284396	Arabidopsis GPSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.7	99.4	GSM311283	Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
13.3	99.4	GSM265432	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.7	99.3	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.2	99.2	GSM284398	Arabidopsis GGSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.4	99.2	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.9	99.1	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	GSM106833	opr3_JA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.9	99.0	GSM147964	WT Globular Stage Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
8.6	99.0	GSM147963	WT Globular Stage Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.082 2 GO:0019464
0.043 1 GO:0000024 The chemical reactions and pathways resulting in the formation of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose).
0.043 1 GO:0010266 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus.

SF	Genes	GO ID	Process Name
0.082	2	GO:0019464
0.043	1	GO:0000024	The chemical reactions and pathways resulting in the formation of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose).
0.043	1	GO:0010266	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.050 3 00710 Carbon fixation in photosynthetic organisms
0.047 3 00500 Starch and sucrose metabolism
0.047 2 00900 Terpenoid backbone biosynthesis

SF	Genes	KEGG ID	Pathway name
0.050	3	00710	Carbon fixation in photosynthetic organisms
0.047	3	00500	Starch and sucrose metabolism
0.047	2	00900	Terpenoid backbone biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At4g17090
Gene name	CT-BMY (CHLOROPLAST BETA-AMYLASE)
Module size	45 genes
NF	0.20
%ile	19.2

Co-expression analysis

Gene ID At4g17090 Gene name CT-BMY (CHLOROPLAST BETA-AMYLASE) Module size 45 genes NF 0.20 %ile 19.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.050300710Carbon fixation in photosynthetic organisms0.047300500Starch and sucrose metabolism0.047200900Terpenoid backbone biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At4g17090

Gene name CT-BMY (CHLOROPLAST BETA-AMYLASE)

Module size 45 genes

NF 0.20

%ile 19.2

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.050 3 00710 Carbon fixation in photosynthetic organisms
0.047 3 00500 Starch and sucrose metabolism
0.047 2 00900 Terpenoid backbone biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays