CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g16670

Gene name phosphoinositide binding

Module size 5 genes

NF 0.46

%ile 65.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.40 50.8 1.00 At4g16670 827369 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.50 65.3 0.71 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.50 65.3 0.78 At5g09440 830803 EXL4 (EXORDIUM LIKE 4) F:molecular_function unknown;P:biological_process unknown;C:membrane;PB O.I. H.G. S.X.
0.40 50.8 0.71 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.40 50.8 0.72 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.7 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.3 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.1 99.4 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.7 99.2 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4 99.2 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.3 99.2 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.1 99.2 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
9.9 99.1 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.6 99.1 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.2 99.1 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0 99.1 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.8 99.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.6 99.0 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.019 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7107.3.S1_a_at, orthologous to the query gene, At4g16670

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 64.5 Ta.7107.3.S1_a_at - - - 6e-2 At4g16670 phosphoinositide binding O.I. H.G. S.X.
0.84 93.6 TaAffx.53920.1.S1_at - - - 1e-4 At3g49640 FAD binding / catalytic/ tRNA dihydrouridine synthase O.I. H.G. S.X.
0.60 81.0 TaAffx.103481.1.S1_at - - - 7e-2 At1g79960 OFP14 (OVATE FAMILY PROTEIN 14) O.I. H.G. S.X.
0.60 81.0 TaAffx.83918.1.S1_at - - - 1e-9 At5g06180 - O.I. H.G. S.X.
0.54 75.5 Ta.7147.3.S1_x_at - - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.50 72.4 TaAffx.115727.1.S1_at - - - 4e+0 At1g68120 BPC3 (BASIC PENTACYSTEINE 3) O.I. H.G. S.X.
0.48 69.0 Ta.7147.3.S1_a_at - - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.46 66.8 Ta.7147.2.S1_at - - - 9e-9 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.45 65.2 Ta.7474.2.S1_a_at - - - 5e-9 At2g39770 CYT1 (CYTOKINESIS DEFECTIVE 1) O.I. H.G. S.X.
0.42 60.9 Ta.6750.3.S1_at - - - 1e-23 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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