Co-expression analysis

Gene ID At4g16670
Gene name phosphoinositide binding
Module size 5 genes
NF 0.46
%ile 65.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4050.81.00At4g16670827369phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.5065.30.71At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.78At5g09440830803EXL4 (EXORDIUM LIKE 4)F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.H.G.S.X.
0.4050.80.71At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.4050.80.72At4g01680826853MYB55 (myb domain protein 55)Encodes a putative transcription factor (MYB55).O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.799.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.399.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.199.4GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.799.2GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.499.2GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.399.2GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.199.2GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
9.999.1GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.699.1GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.299.1GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.099.1GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.999.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.899.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.699.0GSM133953Murray_2-9_T16-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0191GO:0007242A series of reactions within the cell that occur as a result of a single trigger reaction or compound.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.203024.1.S1_at, orthologous to the query gene, At4g16670

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8397.0PtpAffx.203024.1.S1_at-hypothetical protein-6e-16At5g47440phosphoinositide bindingO.I.H.G.S.X.
0.4067.0PtpAffx.1351.1.A1_at-hypothetical protein-7e-7At1g30360ERD4 (early-responsive to dehydration 4)O.I.H.G.S.X.
0.2645.2PtpAffx.160252.1.S1_at-hypothetical protein-1e-11At4g26640WRKY20O.I.H.G.S.X.
0.2543.6PtpAffx.205019.1.S1_at-hypothetical protein-1e-3At1g24650leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.2034.6PtpAffx.223109.1.S1_s_at-hypothetical protein-7e-15At1g74160unknown proteinO.I.H.G.S.X.
0.2034.6PtpAffx.225869.1.S1_s_at-hypothetical protein-6e-64At3g13690protein kinase family proteinO.I.H.G.S.X.
0.1525.3Ptp.2955.1.A1_at-hypothetical protein-5e-19At5g13610unknown proteinO.I.H.G.S.X.
0.1321.6PtpAffx.12440.1.S1_at-hypothetical protein-3e-35At4g35740RecQl3O.I.H.G.S.X.
0.1219.6PtpAffx.11952.1.S1_a_at---6e-32At1g26640aspartate/glutamate/uridylate kinase family proteinO.I.H.G.S.X.
0.1118.1PtpAffx.70407.1.S1_s_at-hypothetical protein-2e-9At2g40860protein kinase family protein / protein phosphatase 2C ( PP2C) family proteinO.I.H.G.S.X.
0.0914.6PtpAffx.135334.2.S1_a_at-hypothetical protein-2e-4At5g54400methyltransferaseO.I.H.G.S.X.
0.0711.6PtpAffx.60655.1.S1_s_at-hypothetical protein-7e-1At1g11020zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.069.8PtpAffx.45886.1.A1_at-hypothetical protein-5e-13At5g08750zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.069.8PtpAffx.223330.1.S1_at-hypothetical protein-2e-6At3g07530unknown proteinO.I.H.G.S.X.
0.069.8Ptp.942.1.S1_s_at-hypothetical protein-4e-26At2g01440ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.058.3Ptp.710.1.A1_at-hypothetical protein-4e-7At5g57050ABI2 (ABA INSENSITIVE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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