CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g11850

Gene name PLDGAMMA1

Module size 9 genes

NF 0.29

%ile 35.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At4g11850 826791 PLDGAMMA1 phospholipase D (gamma) O.I. H.G. S.X.
0.77 88.0 0.87 At1g18390 838420 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.59 74.7 0.86 At1g18380 - - O.I. H.G. S.X.
0.50 65.3 0.86 At1g24150 839028 FH4 (FORMIN HOMOLOGUE 4) Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin. O.I. H.G. S.X.
0.40 50.8 0.86 At1g03740 839423 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVA O.I. H.G. S.X.
0.40 50.8 0.85 At3g11840 820357 PUB24 (PLANT U-BOX 24) Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. O.I. H.G. S.X.
0.35 41.6 0.87 At1g14370 837999 APK2A (PROTEIN KINASE 2A) Encodes protein kinase APK2a. O.I. H.G. S.X.
0.33 38.1 0.85 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). O.I. H.G. S.X.
0.07 1.9 0.86 At3g21630 821717 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.8 99.5 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.4 99.5 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.9 99.5 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.3 99.2 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.4 99.1 GSM131576 ATGE_31_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.4 99.1 GSM131577 ATGE_31_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.2 99.1 GSM131580 ATGE_32_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
8.2 99.0 GSM131581 ATGE_32_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
6.8 98.7 GSM131579 ATGE_32_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
6.6 98.7 GSM133751 Turner_A-5-Turne-WT-Top1_SLD GSE5729 Role of COV in vascular patterning
6.3 98.6 GSM131630 ATGE_58_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0032491 The series of events in which a stimulus from a molecule of fungal origin is received and converted into a molecular signal.
0.154 1 GO:0002679 A phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
0.154 1 GO:0030041 Assembly of actin filaments by the addition of actin monomers to a filament.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.087 1 00565 Ether lipid metabolism
0.051 1 00564 Glycerophospholipid metabolism
0.027 1 04144 Endocytosis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage