Co-expression analysis

Gene ID At4g09040
Gene name RNA recognition motif (RRM)-containing protein
Module size 90 genes
NF 0.43
%ile 59.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g09040826483RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBAO.I.H.G.S.X.
0.6579.60.91At2g26550817196HO2 (HEME OXYGENASE 2)encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin.O.I.H.G.S.X.
0.5974.70.91At5g53860835467emb2737 (embryo defective 2737)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PO.I.H.G.S.X.
0.5873.80.90At3g27750822397-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.5873.80.91At4g20960827843cytidine/deoxycytidylate deaminase family proteinencodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesisO.I.H.G.S.X.
0.5673.00.90At1g60600842354ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4)Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.O.I.H.G.S.X.
0.5673.00.89At5g52110835287HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BPOO.I.H.G.S.X.
0.5673.00.90At1g32200840112ATS1Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.O.I.H.G.S.X.
0.5570.60.90At2g45770819185CPFTSYchloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.O.I.H.G.S.X.
0.5570.60.90At4g35440829696CLC-E (CHLORIDE CHANNEL E)Enclodes a choride channel protein that is localized to the thlakoid membrane.O.I.H.G.S.X.
0.5570.60.91At3g02660821282emb2768 (EMBRYO DEFECTIVE 2768)F:RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBFMPAO.I.H.G.S.X.
0.5469.50.90At3g19810821518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.5469.50.89At1g21600838761PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.H.G.S.X.
0.5469.50.89At2g26930817234ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase.O.I.H.G.S.X.
0.5368.60.90At1g80770844416PDE318 (pigment defective 318)F:GTP binding;P:unknown;C:unknown;BOMFAPO.I.H.G.S.X.
0.5267.40.90At1g53800841817endonucleaseF:endonuclease activity;P:biological_process unknown;C:cellular_component unknown;OMBFPVO.I.H.G.S.X.
0.5267.40.90At1g74850843824PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.H.G.S.X.
0.5267.40.89At2g04360814975unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;BPOO.I.H.G.S.X.
0.5267.40.89At5g14460831297pseudouridine synthase/ transporterF:pseudouridine synthase activity, transporter activity;P:tRNA processing, pseudouridine synthesis, RNA modification, tRNA pseudouridine synthesis;C:chloroplast;BOMFAPO.I.H.G.S.X.
0.5267.40.90At2g17033816207pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMO.I.H.G.S.X.
0.5267.40.90At2g31170817673SYCO ARATHF:cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMAFPVO.I.H.G.S.X.
0.5267.40.90At2g30695817620-F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOPO.I.H.G.S.X.
0.5267.40.90At3g60620825233phosphatidate cytidylyltransferase family proteinF:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFPO.I.H.G.S.X.
0.5166.30.90At3g51140824278-F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPOO.I.H.G.S.X.
0.5166.30.90At4g20130827759PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMOO.I.H.G.S.X.
0.5166.30.90At4g30580829181ATS2Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal.O.I.H.G.S.X.
0.5166.30.89At3g02450821139cell division protein ftsH, putativeF:in 6 functions;P:unknown;C:integral to membrane, chloroplast;BOMFPAVO.I.H.G.S.X.
0.5065.30.91At1g02150839577pentatricopeptide (PPR) repeat-containing proteinF:binding;P:unknown;C:chloroplast;POFMBO.I.H.G.S.X.
0.5065.30.90At3g05410819705unknown proteinF:unknown;P:unknown;C:unknown;POO.I.H.G.S.X.
0.5065.30.89At1g08640837386unknown proteinF:unknown;P:unknown;C:chloroplast, chloroplast envelope;PBOO.I.H.G.S.X.
0.5065.30.89At1g59840842278CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BOPO.I.H.G.S.X.
0.4963.50.89At1g23360838945UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;BOAFMPO.I.H.G.S.X.
0.4963.50.89At2g25840817126OVA4 (ovule abortion 4)F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAPO.I.H.G.S.X.
0.4963.50.89At1g70200843356RNA recognition motif (RRM)-containing proteinF:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVAO.I.H.G.S.X.
0.4862.50.90At5g48830834941unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.H.G.S.X.
0.4862.50.90At1g72640843596binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast;BPOMAO.I.H.G.S.X.
0.4862.50.89At1g48520841273GATB (GLU-ADT SUBUNIT B)Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).O.I.H.G.S.X.
0.4862.50.90At3g28460822476unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOPAO.I.H.G.S.X.
0.4761.20.90At1g01970839299pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMFO.I.H.G.S.X.
0.4761.20.91At5g42765834286-F:unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO.I.H.G.S.X.
0.4659.80.89At4g24750828577-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOAO.I.H.G.S.X.
0.4659.80.89At1g11870837734SRS (SERYL-TRNA SYNTHETASE)Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.H.G.S.X.
0.4659.80.89At3g13740820583URF 4-relatedF:RNA binding, ribonuclease III activity;P:RNA processing;C:unknown;BOPO.I.H.G.S.X.
0.4659.80.90At1g0108083946333 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, nucleus, chloroplast, chloroplast envelope;MPOFBAO.I.H.G.S.X.
0.4659.80.89At5g17710831638EMB1241 (embryo defective 1241)F:protein binding, chaperone binding, protein homodimerization activity, adenyl-nucleotide exchange factor activity;P:embryonic development ending in seed dormancy, protein folding;C:thylakoid, chloroplast, chloroplast stroma;BOMFPAVO.I.H.G.S.X.
0.4558.30.89At5g40160834014EMB506 (embryo defective 506)Encodes ankyrin repeat protein EMB506.O.I.H.G.S.X.
0.4558.30.90At2g36000818173mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMO.I.H.G.S.X.
0.4558.30.89At2g41720818771EMB2654 (EMBRYO DEFECTIVE 2654)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAO.I.H.G.S.X.
0.4457.20.90At5g50280835093EMB1006 (embryo defective 1006)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAO.I.H.G.S.X.
0.4457.20.89At5g12130831086PDE149 (PIGMENT DEFECTIVE 149)F:unknown;P:thylakoid membrane organization;C:chloroplast thylakoid membrane, integral to membrane;BOPAMO.I.H.G.S.X.
0.4457.20.89At5g20130832135unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOBO.I.H.G.S.X.
0.4457.20.89At4g33480829485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPFO.I.H.G.S.X.
0.4355.30.90At4g17560827471ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMFO.I.H.G.S.X.
0.4355.30.90At1g11750837719CLPP6One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).O.I.H.G.S.X.
0.4355.30.89At3g2023082156750S ribosomal protein L18 familyF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;BOPMO.I.H.G.S.X.
0.4355.30.90At3g25480822132rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.H.G.S.X.
0.4355.30.90At3g59870825157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.4253.90.89At4g32915829428-F:molecular_function unknown;P:regulation of translational fidelity;C:chloroplast;BOAPO.I.H.G.S.X.
0.4152.40.89At5g09320830791VPS9BF:molecular_function unknown;P:transport;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.4152.40.89At1g78180844154bindingF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.H.G.S.X.
0.4152.40.90At4g21190827867emb1417 (embryo defective 1417)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POMBO.I.H.G.S.X.
0.4050.80.90At5g02710831827unknown proteinF:unknown;P:unknown;C:chloroplast;OBPAO.I.H.G.S.X.
0.3948.40.89At4g36390829791radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAPO.I.H.G.S.X.
0.3948.40.89At3g20930821642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBAO.I.H.G.S.X.
0.3948.40.89At5g66055836737AKRP (ANKYRIN REPEAT PROTEIN)F:protein binding;P:embryonic development ending in seed dormancy;C:chloroplast;MOBFPVAO.I.H.G.S.X.
0.3948.40.89At3g10670820236ATNAP7Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged FeS clusters. Expressed in embryos and meristems.O.I.H.G.S.X.
0.3846.70.89At3g63190825494RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPFO.I.H.G.S.X.
0.3745.00.89At5g08280830724HEMC (HYDROXYMETHYLBILANE SYNTHASE)Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.O.I.H.G.S.X.
0.3745.00.90At5g52100835286crr1 (chlororespiration reduction 1)Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex.O.I.H.G.S.X.
0.3643.60.89At3g08740820021elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPAO.I.H.G.S.X.
0.3643.60.89At5g55710835665-F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPO.I.H.G.S.X.
0.3541.60.89At5g22340832294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.H.G.S.X.
0.3541.60.89At3g57560824923aspartate/glutamate/uridylate kinase family proteinencodes a N-acetylglutamate kinase, involved in arginine biosynthesisO.I.H.G.S.X.
0.3541.60.89At3g52155824380-F:unknown;P:unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.3439.80.89At5g04710830349aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPAO.I.H.G.S.X.
0.3338.10.89At1g06820837193CRTISO (CAROTENOID ISOMERASE)Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.O.I.H.G.S.X.
0.3338.10.90At5g45390834575CLPP4 (CLP PROTEASE P4)One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).O.I.H.G.S.X.
0.3338.10.89At3g63490825524ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMPO.I.H.G.S.X.
0.3338.10.90At1g32990840194PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11O.I.H.G.S.X.
0.3338.10.89At3g25805822172unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPOO.I.H.G.S.X.
0.3235.70.89At2g42070818807ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23)F:hydrolase activity, FAD diphosphatase activity;P:unknown;C:chloroplast;BOMAPFO.I.H.G.S.X.
0.3235.70.89At1g80030844343DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVO.I.H.G.S.X.
0.3133.80.89At1g02910839350LPA1 (LOW PSII ACCUMULATION1)Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.O.I.H.G.S.X.
0.3032.10.89At3g1312082050030S ribosomal protein S10, chloroplast, putativeF:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPFO.I.H.G.S.X.
0.2930.30.89At5g5460083554950S ribosomal protein L24, chloroplast (CL24)F:structural constituent of ribosome;P:translation;C:chloroplast stroma, chloroplast, large ribosomal subunit;BOMPFO.I.H.G.S.X.
0.2830.30.89At5g13510831195ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMFO.I.H.G.S.X.
0.2830.30.89At1g05190839273emb2394 (embryo defective 2394)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPMO.I.H.G.S.X.
0.2624.40.89At2g48070819419RPH1 (RESISTANCE TO PHYTOPHTHORA 1)Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.O.I.H.G.S.X.
0.2420.70.89At3g56010824767unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;PO.I.H.G.S.X.
0.2014.40.89At1g20810838672immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.399.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.099.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
47.699.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.499.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
47.199.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.199.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
47.099.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
45.799.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.599.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
45.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.099.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.999.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.399.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.199.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.699.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.999.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.099.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.199.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.199.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.899.6GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.799.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.199.5GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
14.099.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.099.4E-ATMX-33-raw-cel-1562596241
12.999.3GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.199.2GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.799.2E-ATMX-33-raw-cel-1562596197
10.199.2GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.799.1GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
9.699.1E-ATMX-33-raw-cel-1562596103
9.099.1GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0563GO:0010027A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane.Link to AmiGO
0.0453GO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.Link to AmiGO
0.0453GO:0009658A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.073500970Aminoacyl-tRNA biosynthesisLink to KEGG PATHWAY
0.035200130Ubiquinone and other terpenoid-quinone biosynthesisLink to KEGG PATHWAY
0.020100740Riboflavin metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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