Co-expression analysis

Gene ID At4g08190
Gene name Ras-related GTP-binding protein, putative
Module size 85 genes
NF 0.28
%ile 32.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g08190826369Ras-related GTP-binding protein, putativeF:GTP binding;P:small GTPase mediated signal transduction;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.5673.00.76At1g35663840469transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.76At4g19620827704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.20.77At1g36670840575transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.75At3g42310823222unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VMPOO.I.H.G.S.X.
0.4761.20.75At4g07450826178transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.75At2g04063814941glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMBOO.I.H.G.S.X.
0.4659.80.76At1g37010840611-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4659.80.76At5g46440834687-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4558.30.77At2g13430815829unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.73At3g43160823389MEE38 (maternal effect embryo arrest 38)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OPFO.I.H.G.S.X.
0.4152.40.76At5g28950833021unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.4050.80.73At4g15710827248unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.74At1g47350841138F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.73At2g07705815380unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.76At3g46380823785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.74At3g60790825250F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.H.G.S.X.
0.3745.00.74At4g20690827816unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3643.60.74At2g18530816368protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MOPFBVAO.I.H.G.S.X.
0.3643.60.78At4g084203770258transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.73At1g34400840342unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3643.60.78At1g14800838045-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.3643.60.74At3g43680823471transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.74At1g66790842997unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3643.60.75At2g14010815885transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.73At3g42330823226transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.73At2g10920815556unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.80.73At1g09220837442pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cytosolic ribosome;POMFO.I.H.G.S.X.
0.3439.80.74At2g04870815034unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.H.G.S.X.
0.3439.80.74At2g22520816785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFO.I.H.G.S.X.
0.3439.80.74At3g61720825345C2 domain-containing proteinF:unknown;P:tryptophan biosynthetic process;C:unknown;PMOFO.I.H.G.S.X.
0.3439.80.73At5g348403771203transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.74At5g35290833483unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.3439.80.74At2g45380819145-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.3439.80.74At3g320603769238transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.74At2g34230817984-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.3338.10.75At5g282003770776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.73At3g04390819594xanthine dehydrogenase family proteinF:electron carrier activity, oxidoreductase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;MOBFPO.I.H.G.S.X.
0.3338.10.73At1g06340837145agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3338.10.73At3g30810822839transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.74At5g358003771304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.74At1g29480839825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.H.G.S.X.
0.3235.70.74At2g07300815300transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3133.80.73At2g111503768073transposable element genepseudogene of putative replication protein A1O.I.H.G.S.X.
0.3133.80.73At1g17150838286glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.3133.80.76At3g30200822713-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3032.10.78At2g07190815288-F:unknown;P:unknown;C:cellular_component unknown;POBMFO.I.H.G.S.X.
0.3032.10.75At5g26890832747unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.2930.30.75At2g132303767963transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.75At3g43470823432nucleic acid binding / zinc ion bindingF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2830.30.73At1g35614840459unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2830.30.75At5g66500836782pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.2830.30.74At1g52640841696pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.2726.20.73At1g36756840586unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.20.74At2g19420816461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.20.73At2g04580815000transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.73At5g49260834986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.75At4g03890825697transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.74At4g073603770409transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.73At2g06500815208hAT dimerisation domain-containing protein / transposase-relatedF:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.
0.2624.40.74At3g61940825367MTPA1member of Zinc transporter (ZAT) familyO.I.H.G.S.X.
0.2522.60.74At5g304403770957transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.73At5g37030833673tRNA-splicing endonuclease positive effector-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAVO.I.H.G.S.X.
0.2420.70.74At2g04420814982nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:mitochondrion;PBOO.I.H.G.S.X.
0.2420.70.73At3g430503769524transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2319.30.73At1g35150840402-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.2319.30.73At3g32910823051transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.50.74At1g419303767211transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.50.75At4g040503770301transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.50.78At4g078903770066transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.50.73At4g29710829092phosphodiesterase/nucleotide pyrophosphatase-relatedF:catalytic activity;P:metabolic process;C:cellular_component unknown;MBFPOVO.I.H.G.S.X.
0.2217.50.74At1g440703767337transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.73At2g116803767822transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2014.40.74At1g44222--O.I.H.G.S.X.
0.1912.70.74At3g42160823189pectinesterase-relatedF:pectinesterase activity;P:cell wall modification;C:cell wall;PO.I.H.G.S.X.
0.1811.40.73At2g06230815179transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.75At5g54480835536unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVAO.I.H.G.S.X.
0.1811.40.73At2g14730815961transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.74At5g54330835521unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.20.74At1g354803766947transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.75At4g03570825657-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.20.75At1g43330840934myb family protein-relatedF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFVO.I.H.G.S.X.
0.168.80.74At5g287003770831transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.73At1g36020840505-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.146.80.75At5g369903771337transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
41.399.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.699.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.799.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.699.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.399.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.899.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.599.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.699.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.399.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.799.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.199.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.799.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.099.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.199.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.599.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.599.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.699.6GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
24.399.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.999.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.799.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.999.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.899.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.599.3GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.299.3GSM131454AtGen_6-9322_Heatstress-Roots-3.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
11.799.3GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.299.2GSM131453AtGen_6-9321_Heatstress-Roots-3.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
11.099.2GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.699.1GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.499.1GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.199.1E-MEXP-1474-raw-cel-1593932929

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0201GO:0006829The directed movement of zinc (Zn) ions into, out of, within or between cells.Link to AmiGO
0.0141GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.Link to AmiGO
0.0141GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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