Co-expression analysis

Gene ID At4g04530
Gene name transposable element gene
Module size 76 genes
NF 0.57
%ile 78.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9597.01.00At4g04530825784transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.94At3g43390823419transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.93At3g42440823246transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.93At3g433103769554-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.93At4g038003770157transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.95At2g061803768579transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.93At4g055103769818transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.92At1g087353766684transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.94At4g204903770090transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.94At2g34290817990protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPFBVAO.I.H.G.S.X.
0.6781.60.93At1g48290841249transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.92At3g28590822489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6680.10.93At5g33390833329glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMOPFVAO.I.H.G.S.X.
0.6680.10.93At3g42060823174myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PFO.I.H.G.S.X.
0.6680.10.94At2g24920817030transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.93At2g12520815726transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.94At4g056103770279transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.92At4g09220826504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.6378.10.93At3g22140--O.I.H.G.S.X.
0.6277.30.92At2g12610815735transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.93At4g044303769953transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.94At2g21680816706-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.6176.70.94At2g126803768407transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.94At2g055503768218transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.93At2g05030815051transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.94At2g076503767967transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.93At1g365903767015transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At2g13070815789transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.93At4g08710826440transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.93At3g30480822761transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.92At5g46660834709CHP-rich zinc finger protein, putativeF:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.93At5g29050833041unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.93At2g058203768385transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.92At3g30710822797transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.92At2g289803767749transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.92At5g28190832895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBVO.I.H.G.S.X.
0.5773.80.93At3g30610822776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.92At2g11570815630unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.5673.00.92At1g303903766850transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.93At2g070303768139transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.92At2g11620815635unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.H.G.S.X.
0.5673.00.92At2g13550815841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.5673.00.93At4g075403770365transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.93At3g428363769502transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.94At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.93At4g155903770245transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.93At4g079203770071transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.92At4g08820826453transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.92At2g149303768116transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.94At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.93At5g357103771292transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.94At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At1g346203766920transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At2g07740815421transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At2g059603768174transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At4g03750825677transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At1g27870839680nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.5267.40.92At1g417953767198transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.92At5g332503771111transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.92At1g375373767073transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.92At2g112353768342transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.92At2g061303767896transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.93At3g452703769649transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.92At1g357603766961transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.92At4g09290826512transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.93At4g042703769894transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.93At2g073303767907transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.93At2g10390815498transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.93At3g440303769618-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.93At1g433003767304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.92At1g312103766867transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.92At1g301503766846transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.92At4g042803769896transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.93At3g430603769525transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.92At1g362703766988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.92At1g338133766903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
47.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.599.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.599.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.099.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.399.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.799.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.499.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.499.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.299.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.999.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.499.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
28.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.399.7GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
23.099.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.699.6GSM258003LMPC-derived phloem_2GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
20.699.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.399.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.899.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.999.4GSM128753De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
14.699.4GSM128756De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
14.299.4GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.499.4GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.199.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.099.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.799.3E-MEXP-807-raw-cel-1173273060
12.499.3GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.999.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.899.3GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.599.2E-MEXP-807-raw-cel-1173273170
10.599.2GSM258004LMPC-derived phloem_3GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
10.499.2E-MEXP-807-raw-cel-1173273116
10.399.2GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
10.399.2GSM258002LMPC-derived phloem_1GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
10.299.2GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
9.999.1E-MEXP-807-raw-cel-1173273223
9.499.1GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
8.999.0GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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