Co-expression analysis

Gene ID At4g03570
Gene name -
Module size 59 genes
NF 0.50
%ile 71.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8089.81.00At4g03570825657-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7586.90.91At2g06120815168transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.92At3g42130823185glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVO.I.H.G.S.X.
0.6781.60.91At2g076203767903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.89At2g062203768629transposable element genepseudogene of unknown proteinO.I.H.G.S.X.
0.6781.60.90At3g29660822644transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.91At3g55930824759RNA splicing factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.H.G.S.X.
0.6579.60.91At5g54480835536unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVAO.I.H.G.S.X.
0.6478.90.91At5g26020832671transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.90At1g364403767000transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.93At2g144203768298transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.89At3g308003769137transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.91At3g30845822868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6075.70.90At2g150603767889transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.92At1g37020840613Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFAO.I.H.G.S.X.
0.5873.80.91At2g29610817511-pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domainO.I.H.G.S.X.
0.5773.80.92At5g353403771268transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.91At2g106503767860transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.89At2g07770815424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.89At2g073953768424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.90At1g43320840933unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5570.60.92At1g29620839839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5570.60.89At2g077303768192transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.90At3g42160823189pectinesterase-relatedF:pectinesterase activity;P:cell wall modification;C:cell wall;PO.I.H.G.S.X.
0.5368.60.91At3g30660822783transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.90At3g29640822637transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.90At2g29770817527kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAO.I.H.G.S.X.
0.5267.40.90At1g778203767718transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.90At3g17190820976unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.5267.40.91At3g430603769525transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At2g115903768652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.90At1g43660840950transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.90At3g296503769022transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.91At2g064903768412transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.91At3g440303769618-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.89At3g25090822100F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4862.50.91At1g36510840559-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4862.50.90At2g063303768229transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.90At2g130203768601transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.92At1g301503766846transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.90At2g10390815498transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.90At3g30610822776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.89At3g32130822976-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4457.20.90At4g040503770301transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.92At5g03400831849unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.4253.90.91At1g338133766903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.90At3g430203769521transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.89At1g430503767286-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.90At5g369903771337transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.89At2g061503767897transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.91At4g08430826402Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;OMPBFAVO.I.H.G.S.X.
0.4050.80.90At3g28590822489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.89At2g055503768218transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.90At1g362703766988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3745.00.90At2g24920817030transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.89At1g433003767304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.91At2g058203768385transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.89At2g29605817510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.3439.80.92At1g401053767152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.099.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
60.499.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.299.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
55.799.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.799.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.399.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.999.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.899.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.099.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
49.799.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
49.399.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
49.199.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.399.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.399.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.899.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.899.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.199.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.899.7GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
23.899.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.099.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.899.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.699.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.799.5GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
18.399.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
18.199.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.799.5GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.199.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
13.599.4GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
13.199.4GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
12.599.3E-MEXP-807-raw-cel-1173273060
9.999.1GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.699.1E-MEXP-807-raw-cel-1173273170
9.599.1GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.399.1E-MEXP-807-raw-cel-1173273116
9.099.1GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0161GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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