Co-expression analysis

Gene ID At4g01410
Gene name harpin-induced family protein / HIN1 family protein / harpin-responsive family protein
Module size 69 genes
NF 0.08
%ile 5.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At4g01410828166harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.5065.30.78At5g60460836167sec61beta family proteinF:protein transporter activity;P:protein transport;C:plasma membrane;MFPOBO.I.H.G.S.X.
0.2930.30.73At3g15260820757protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:unknown;MPOFBVAO.I.H.G.S.X.
0.2930.30.80At1g55190841962PRA7F:unknown;P:vesicle-mediated transport;C:endoplasmic reticulum, plasma membrane;PMFOO.I.H.G.S.X.
0.2830.30.73At1g69800843316CBS domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPAFO.I.H.G.S.X.
0.2726.20.77At4g27780828891ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)Encodes acyl-CoA-binding protein with ankyrin repeatsO.I.H.G.S.X.
0.2726.20.75At1g69295843261PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.O.I.H.G.S.X.
0.2217.50.70At5g52420835318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.2115.80.70At4g23930828493-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2014.40.75At3g16190820865isochorismatase hydrolase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOFAPO.I.H.G.S.X.
0.1811.40.77At4g31590829286ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)encodes a gene similar to cellulose synthaseO.I.H.G.S.X.
0.157.80.76At1g02816839308unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;POO.I.H.G.S.X.
0.157.80.72At1g17530838327ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23)Encodes a translocase of inner mitochondrial membrane.O.I.H.G.S.X.
0.146.80.75At3g03320821284-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;AOPBMO.I.H.G.S.X.
0.146.80.74At5g06370830525NC domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBMOO.I.H.G.S.X.
0.135.80.74At4g36360829788BGAL3 (beta-galactosidase 3)putative beta-galactosidase (BGAL3 gene)O.I.H.G.S.X.
0.135.80.71At2g19340816451membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOO.I.H.G.S.X.
0.124.90.71At1g62610842558short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.114.10.70At3g61980825371serine protease inhibitor, Kazal-type family proteinF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:plasma membrane, anchored to membrane;PO.I.H.G.S.X.
0.114.10.70At5g65520836678bindingF:binding;P:biological_process unknown;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.114.10.72At1g75760843909ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFO.I.H.G.S.X.
0.114.10.70At1g68220843151unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.114.10.70At2g20120816531COV1 (CONTINUOUS VASCULAR RING)Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem. Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles.O.I.H.G.S.X.
0.114.10.70At1g03030839473phosphoribulokinase/uridine kinase family proteinF:kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding;P:biosynthetic process;C:chloroplast;BOFMPAO.I.H.G.S.X.
0.103.40.70At2g06010815155ORG4 (OBP3-RESPONSIVE GENE 4)encodes a novel protein whose expression level is induced in lines overexpressing salicylic-acid (SA)-inducible Arabidopsis DNA binding with one finger (Dof) transcription factor, called OBF-binding protein 3.O.I.H.G.S.X.
0.103.40.71At1g06110837120SKIP16 (SKP1/ASK-interacting protein 16)F:protein binding;P:biological_process unknown;C:SCF ubiquitin ligase complex;BOMPFO.I.H.G.S.X.
0.103.40.70At5g54640835553RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.O.I.H.G.S.X.
0.103.40.71At2g25520817090phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.103.40.72At3g07760819967-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.H.G.S.X.
0.103.40.71At5g11280830998unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.092.80.70At4g40040830165histone H3.2F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.H.G.S.X.
0.092.80.71At3g07565819946DNA bindingF:DNA binding;P:biological_process unknown;C:chloroplast;PMOO.I.H.G.S.X.
0.092.80.73At4g38570830014PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)F:phosphotransferase activity, for other substituted phosphate groups;P:phosphatidylinositol biosynthetic process;C:endomembrane system, membrane;BOMFPAO.I.H.G.S.X.
0.092.80.70At5g63190836440MA3 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.082.30.70At5g59800836101MBD7 (METHYL-CPG-BINDING DOMAIN 7)Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. Interacts with arginine methyltransferase 11. (AtPRMT11O.I.H.G.S.X.
0.082.30.71At1g52740841707HTA9 (HISTONE H2A PROTEIN 9)Encodes HTA9, a histone H2A protein.O.I.H.G.S.X.
0.082.30.70At1g22790838885unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.082.30.70At3g50880824252HhH-GPD base excision DNA repair family proteinF:catalytic activity;P:DNA repair, base-excision repair;C:chloroplast;OBFPAO.I.H.G.S.X.
0.082.30.71At3g57340824901DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:plasma membrane;BOMFPAVO.I.H.G.S.X.
0.082.30.73At5g17190831583unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.082.30.73At5g53470835428ACBP1 (ACYL-COA BINDING PROTEIN 1)Encodes an acyl-CoA binding protein that is localized to vesicles,and plasma membrane especially in epidermal cells of heart, torpedo and cotyledon stage embryos, cell wall of the seed coat. Northern blot analysis showed that the 1.4 kb ACBP1 mRNA was expressed in silique, root, stem, leaf and flower.O.I.H.G.S.X.
0.071.90.70At5g20650832188COPT5encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeastO.I.H.G.S.X.
0.071.90.71At2g21240816663BPC4 (BASIC PENTACYSTEINE 4)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMBO.I.H.G.S.X.
0.071.90.70At1g04260839565MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.O.I.H.G.S.X.
0.071.90.72At2g29980817548FAD3 (FATTY ACID DESATURASE 3)Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.O.I.H.G.S.X.
0.071.90.73At1g18840838465IQD30F:calmodulin binding;P:biological_process unknown;C:vacuole;OMPBFVAO.I.H.G.S.X.
0.071.90.72At4g28050828920TET7 (TETRASPANIN7)Member of TETRASPANIN familyO.I.H.G.S.X.
0.071.90.70At5g06660830554unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPO.I.H.G.S.X.
0.071.90.70At5g65430836668GRF8 (GENERAL REGULATORY FACTOR 8)member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.061.40.70At5g18250831943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.061.40.70At4g32960829433unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.061.40.70At4g16442827339integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.061.40.71At1g06630837172-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.061.40.73At1g06010837110unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.061.40.71At3g01360821158unknown proteinF:molecular_function unknown;P:unknown;C:unknown;POO.I.H.G.S.X.
0.061.40.70At5g27210832779-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.051.10.71At2g21410816680VHA-A2 (VACUOLAR PROTON ATPASE A2)Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast.O.I.H.G.S.X.
0.051.10.70At1g32260840118unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.051.10.70At2g14530815940unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.051.10.70At3g10810820250zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.040.90.70At5g14420831293RGLG2 (RING domain Ligase2)F:ubiquitin-protein ligase activity;P:N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process;C:plasma membrane;MOPVFBO.I.H.G.S.X.
0.040.90.70At3g02600821299LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)Encodes phosphatidic acid phosphatase. Expressed during germination.O.I.H.G.S.X.
0.040.90.70At5g01390831415DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.H.G.S.X.
0.040.90.70At1g05150839312calcium-binding EF hand family proteinF:binding, zinc ion binding, calcium ion binding;P:biological_process unknown;C:plasma membrane;BOMAPFO.I.H.G.S.X.
0.040.90.71At5g13390831180NEF1 (NO EXINE FORMATION 1)Required for normal pollen development and lipid accumulation within the tapetumO.I.H.G.S.X.
0.040.90.71At3g51120824276DNA binding / nucleic acid binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding, nucleic acid binding;P:histone modification, transcription initiation;C:nucleus;MOPBFVO.I.H.G.S.X.
0.030.60.70At5g15880831445unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.030.60.70At3g22680821839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.030.60.70At4g34870829639ROC5 (ROTAMASE CYCLOPHILIN 5)belongs to cyclophilin familyO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.799.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
39.599.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.499.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.699.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.099.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.599.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.199.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.099.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.999.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.899.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
28.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.099.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.799.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.999.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.599.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
19.299.6GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
17.999.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.999.5GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.899.5GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.199.4GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.999.4GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.099.4GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
11.699.3GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.599.3GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.399.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.299.2GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.799.2GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.699.1GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.399.1GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.099.1GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0552GO:0010288A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus.Link to AmiGO
0.0323GO:0015031The directed movement of proteins into, out of, within or between cells.Link to AmiGO
0.0291GO:0046739The dissemination of infectious virion particles within an infected host organism.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.021101040Biosynthesis of unsaturated fatty acidsLink to KEGG PATHWAY
0.020100564Glycerophospholipid metabolismLink to KEGG PATHWAY
0.019100562Inositol phosphate metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage