CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g01310

Gene name ribosomal protein L5 family protein

Module size 25 genes

NF 0.81

%ile 95.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM O.I. H.G. S.X.
0.94 96.7 0.98 At1g07320 837243 RPL4 encodes a plastid ribosomal protein L4 O.I. H.G. S.X.
0.92 96.0 0.98 At3g52150 824379 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBA O.I. H.G. S.X.
0.90 95.1 0.98 At1g78630 844199 emb1473 (embryo defective 1473) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP O.I. H.G. S.X.
0.89 94.6 0.97 At2g33450 817910 50S ribosomal protein L28, chloroplast (CL28) F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPF O.I. H.G. S.X.
0.86 93.1 0.96 At1g74970 843836 RPS9 (RIBOSOMAL PROTEIN S9) ribosomal protein S9, nuclear encoded component of the chloroplast ribosome O.I. H.G. S.X.
0.85 92.4 0.96 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 O.I. H.G. S.X.
0.85 92.4 0.97 At3g13120 820500 30S ribosomal protein S10, chloroplast, putative F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF O.I. H.G. S.X.
0.85 92.4 0.96 At3g15190 820750 chloroplast 30S ribosomal protein S20, putative F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPM O.I. H.G. S.X.
0.84 91.9 0.96 At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP O.I. H.G. S.X.
0.84 91.9 0.97 At1g05190 839273 emb2394 (embryo defective 2394) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM O.I. H.G. S.X.
0.84 91.9 0.97 At2g43030 818905 ribosomal protein L3 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFP O.I. H.G. S.X.
0.82 90.9 0.97 At5g47190 834765 ribosomal protein L19 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF O.I. H.G. S.X.
0.82 90.9 0.97 At1g35680 840472 50S ribosomal protein L21, chloroplast / CL21 (RPL21) F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMF O.I. H.G. S.X.
0.82 90.9 0.97 At3g54210 824588 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP O.I. H.G. S.X.
0.81 90.4 0.96 At2g33800 817947 ribosomal protein S5 family protein F:structural constituent of ribosome, RNA binding;P:response to cadmium ion, response to cold, translation;C:in 8 components;BOMAFP O.I. H.G. S.X.
0.79 89.1 0.96 At5g08280 830724 HEMC (HYDROXYMETHYLBILANE SYNTHASE) Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast. O.I. H.G. S.X.
0.79 89.1 0.96 At4g24770 828579 RBP31 (31-KDA RNA BINDING PROTEIN) Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). O.I. H.G. S.X.
0.78 88.6 0.97 At3g08740 820021 elongation factor P (EF-P) family protein F:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPA O.I. H.G. S.X.
0.75 86.9 0.96 At5g14910 831343 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. H.G. S.X.
0.73 85.5 0.96 At1g32990 840194 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 O.I. H.G. S.X.
0.73 85.5 0.96 At5g13510 831195 ribosomal protein L10 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF O.I. H.G. S.X.
0.67 81.6 0.97 At1g75350 843871 emb2184 (embryo defective 2184) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP O.I. H.G. S.X.
0.67 81.6 0.96 At3g11630 820335 2-cys peroxiredoxin, chloroplast (BAS1) Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues. O.I. H.G. S.X.
0.65 79.6 0.96 At2g37660 818343 binding / catalytic/ coenzyme binding F:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAM O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At4g01310	827947	ribosomal protein L5 family protein	F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM	O.I.	H.G.	S.X.
0.94	96.7	0.98	At1g07320	837243	RPL4	encodes a plastid ribosomal protein L4	O.I.	H.G.	S.X.
0.92	96.0	0.98	At3g52150	824379	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBA	O.I.	H.G.	S.X.
0.90	95.1	0.98	At1g78630	844199	emb1473 (embryo defective 1473)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP	O.I.	H.G.	S.X.
0.89	94.6	0.97	At2g33450	817910	50S ribosomal protein L28, chloroplast (CL28)	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPF	O.I.	H.G.	S.X.
0.86	93.1	0.96	At1g74970	843836	RPS9 (RIBOSOMAL PROTEIN S9)	ribosomal protein S9, nuclear encoded component of the chloroplast ribosome	O.I.	H.G.	S.X.
0.85	92.4	0.96	At1g79850	844324	RPS17 (RIBOSOMAL PROTEIN S17)	nuclear-encoded 30S chloroplast ribosomal protein S17	O.I.	H.G.	S.X.
0.85	92.4	0.97	At3g13120	820500	30S ribosomal protein S10, chloroplast, putative	F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF	O.I.	H.G.	S.X.
0.85	92.4	0.96	At3g15190	820750	chloroplast 30S ribosomal protein S20, putative	F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPM	O.I.	H.G.	S.X.
0.84	91.9	0.96	At1g64510	842759	ribosomal protein S6 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP	O.I.	H.G.	S.X.
0.84	91.9	0.97	At1g05190	839273	emb2394 (embryo defective 2394)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM	O.I.	H.G.	S.X.
0.84	91.9	0.97	At2g43030	818905	ribosomal protein L3 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFP	O.I.	H.G.	S.X.
0.82	90.9	0.97	At5g47190	834765	ribosomal protein L19 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF	O.I.	H.G.	S.X.
0.82	90.9	0.97	At1g35680	840472	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMF	O.I.	H.G.	S.X.
0.82	90.9	0.97	At3g54210	824588	ribosomal protein L17 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP	O.I.	H.G.	S.X.
0.81	90.4	0.96	At2g33800	817947	ribosomal protein S5 family protein	F:structural constituent of ribosome, RNA binding;P:response to cadmium ion, response to cold, translation;C:in 8 components;BOMAFP	O.I.	H.G.	S.X.
0.79	89.1	0.96	At5g08280	830724	HEMC (HYDROXYMETHYLBILANE SYNTHASE)	Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.	O.I.	H.G.	S.X.
0.79	89.1	0.96	At4g24770	828579	RBP31 (31-KDA RNA BINDING PROTEIN)	Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	O.I.	H.G.	S.X.
0.78	88.6	0.97	At3g08740	820021	elongation factor P (EF-P) family protein	F:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPA	O.I.	H.G.	S.X.
0.75	86.9	0.96	At5g14910	831343	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	H.G.	S.X.
0.73	85.5	0.96	At1g32990	840194	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11	O.I.	H.G.	S.X.
0.73	85.5	0.96	At5g13510	831195	ribosomal protein L10 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF	O.I.	H.G.	S.X.
0.67	81.6	0.97	At1g75350	843871	emb2184 (embryo defective 2184)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP	O.I.	H.G.	S.X.
0.67	81.6	0.96	At3g11630	820335	2-cys peroxiredoxin, chloroplast (BAS1)	Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.	O.I.	H.G.	S.X.
0.65	79.6	0.96	At2g37660	818343	binding / catalytic/ coenzyme binding	F:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAM	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
98.2 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.0 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.3 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.5 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.5 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.2 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.7 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
65.9 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.0 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
60.7 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.5 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.1 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.9 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.7 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.4 99.8 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
48.4 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.3 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.6 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.6 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.5 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.9 99.7 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
29.0 99.7 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
28.5 99.7 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
27.2 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.4 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.4 99.6 E-MEXP-1443-raw-cel-1581869745
19.7 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
19.0 99.5 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
16.5 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.8 99.5 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.4 99.4 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
12.2 99.3 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.2 99.2 E-MEXP-1138-raw-cel-1432773322
11.2 99.2 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.1 99.2 E-MEXP-1443-raw-cel-1581869803
10.4 99.2 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.9 99.1 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.6 99.1 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
9.6 99.1 E-MEXP-1138-raw-cel-1432773258
9.5 99.1 E-MEXP-1138-raw-cel-1432773066
9.5 99.1 E-MEXP-285-raw-cel-440782725
9.5 99.1 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.2 99.1 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
8.8 99.0 E-MEXP-285-raw-cel-440782791

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
98.2	99.9	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.0	99.9	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.3	99.9	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.5	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
69.5	99.9	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
69.2	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.7	99.9	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
65.9	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.8	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.0	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
60.7	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.5	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.1	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
54.2	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.9	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.7	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.4	99.8	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
48.4	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.3	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
47.6	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.6	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.9	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.5	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
30.9	99.7	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
29.0	99.7	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
28.5	99.7	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
27.2	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.4	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.4	99.6	E-MEXP-1443-raw-cel-1581869745
19.7	99.6	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
19.0	99.5	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
16.5	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.8	99.5	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.4	99.4	GSM189112	HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1	GSE7796	Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
12.2	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.2	99.2	E-MEXP-1138-raw-cel-1432773322
11.2	99.2	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.1	99.2	E-MEXP-1443-raw-cel-1581869803
10.4	99.2	GSM184922	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.9	99.1	GSM269825	T8 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.6	99.1	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
9.6	99.1	E-MEXP-1138-raw-cel-1432773258
9.5	99.1	E-MEXP-1138-raw-cel-1432773066
9.5	99.1	E-MEXP-285-raw-cel-440782725
9.5	99.1	GSM269821	WT leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.2	99.1	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
8.8	99.0	E-MEXP-285-raw-cel-440782791

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.090 6 GO:0042254 The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.
0.049 1 GO:0006779 The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
0.043 1 GO:0009451 The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.

SF	Genes	GO ID	Process Name
0.090	6	GO:0042254	The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.
0.049	1	GO:0006779	The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
0.043	1	GO:0009451	The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.078 10 03010 Ribosome
0.039 1 00860 Porphyrin and chlorophyll metabolism
0.002 1 01100 Metabolic pathways

SF	Genes	KEGG ID	Pathway name
0.078	10	03010	Ribosome
0.039	1	00860	Porphyrin and chlorophyll metabolism
0.002	1	01100	Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At4g01310
Gene name	ribosomal protein L5 family protein
Module size	25 genes
NF	0.81
%ile	95.0

Co-expression analysis

Gene ID At4g01310 Gene name ribosomal protein L5 family protein Module size 25 genes NF 0.81 %ile 95.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.0781003010Ribosome0.039100860Porphyrin and chlorophyll metabolism0.002101100Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At4g01310

Gene name ribosomal protein L5 family protein

Module size 25 genes

NF 0.81

%ile 95.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.078 10 03010 Ribosome
0.039 1 00860 Porphyrin and chlorophyll metabolism
0.002 1 01100 Metabolic pathways

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays