CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At4g01010

Gene name ATCNGC13

Module size 32 genes

NF 0.44

%ile 62.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.56 73.0 1.00 At4g01010 826427 ATCNGC13 member of Cyclic nucleotide gated channel family O.I. H.G. S.X.
0.60 75.7 0.83 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB O.I. H.G. S.X.
0.57 73.8 0.78 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA O.I. H.G. S.X.
0.56 73.0 0.79 At1g07135 837224 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA O.I. H.G. S.X.
0.54 69.5 0.79 At3g59080 825077 aspartyl protease family protein F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. H.G. S.X.
0.53 68.6 0.81 At3g22160 821780 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV O.I. H.G. S.X.
0.53 68.6 0.79 At1g42990 840897 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. O.I. H.G. S.X.
0.53 68.6 0.80 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.53 68.6 0.80 At3g11840 820357 PUB24 (PLANT U-BOX 24) Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. O.I. H.G. S.X.
0.52 67.4 0.80 At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. O.I. H.G. S.X.
0.52 67.4 0.78 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. O.I. H.G. S.X.
0.52 67.4 0.82 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. O.I. H.G. S.X.
0.49 63.5 0.81 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. H.G. S.X.
0.47 61.2 0.79 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA O.I. H.G. S.X.
0.47 61.2 0.78 At5g26030 832672 FC1 (ferrochelatase 1) encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins O.I. H.G. S.X.
0.46 59.8 0.78 At4g17230 827435 SCL13 (Scarecrow-like 13) Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. O.I. H.G. S.X.
0.45 58.3 0.79 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.44 57.2 0.79 At3g45640 823706 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro. O.I. H.G. S.X.
0.43 55.3 0.79 At2g30250 817575 WRKY25 member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. O.I. H.G. S.X.
0.42 53.9 0.80 At5g13190 831158 - F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.42 53.9 0.78 At5g44070 834430 CAD1 (CADMIUM SENSITIVE 1) Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+. O.I. H.G. S.X.
0.41 52.4 0.82 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. O.I. H.G. S.X.
0.39 48.4 0.78 At3g16720 820924 ATL2 RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. O.I. H.G. S.X.
0.38 46.7 0.81 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). O.I. H.G. S.X.
0.38 46.7 0.80 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA O.I. H.G. S.X.
0.36 43.6 0.79 At3g14050 820619 RSH2 (RELA-SPOT HOMOLOG 2) F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAV O.I. H.G. S.X.
0.36 43.6 0.80 At4g36030 829759 ARO3 (ARMADILLO REPEAT ONLY 3) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. O.I. H.G. S.X.
0.36 43.6 0.79 At1g11050 837646 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.35 41.6 0.78 At4g30210 829144 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. O.I. H.G. S.X.
0.34 39.8 0.81 At1g13210 837881 ACA.l (autoinhibited Ca2+/ATPase II) F:calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPA O.I. H.G. S.X.
0.33 38.1 0.79 At5g47070 834753 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.26 24.4 0.82 At4g35600 829712 CONNEXIN 32 plant-type connexin (gap junction-type protein), a component of plasmodesmata O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.56	73.0	1.00	At4g01010	826427	ATCNGC13	member of Cyclic nucleotide gated channel family	O.I.	H.G.	S.X.
0.60	75.7	0.83	At4g34390	829589	XLG2 (extra-large GTP-binding protein 2)	F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB	O.I.	H.G.	S.X.
0.57	73.8	0.78	At4g34150	829563	C2 domain-containing protein	F:unknown;P:response to cold;C:unknown;MPFOBVA	O.I.	H.G.	S.X.
0.56	73.0	0.79	At1g07135	837224	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA	O.I.	H.G.	S.X.
0.54	69.5	0.79	At3g59080	825077	aspartyl protease family protein	F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	H.G.	S.X.
0.53	68.6	0.81	At3g22160	821780	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV	O.I.	H.G.	S.X.
0.53	68.6	0.79	At1g42990	840897	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription.	O.I.	H.G.	S.X.
0.53	68.6	0.80	At3g09830	820141	protein kinase, putative	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.53	68.6	0.80	At3g11840	820357	PUB24 (PLANT U-BOX 24)	Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.	O.I.	H.G.	S.X.
0.52	67.4	0.80	At4g12720	826884	NUDT7	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	O.I.	H.G.	S.X.
0.52	67.4	0.78	At1g29690	839846	CAD1 (constitutively activated cell death 1)	Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.	O.I.	H.G.	S.X.
0.52	67.4	0.82	At1g28380	839735	NSL1 (necrotic spotted lesions 1)	This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.	O.I.	H.G.	S.X.
0.49	63.5	0.81	At1g07000	837210	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	H.G.	S.X.
0.47	61.2	0.79	At1g55450	841992	embryo-abundant protein-related	F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA	O.I.	H.G.	S.X.
0.47	61.2	0.78	At5g26030	832672	FC1 (ferrochelatase 1)	encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins	O.I.	H.G.	S.X.
0.46	59.8	0.78	At4g17230	827435	SCL13 (Scarecrow-like 13)	Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.	O.I.	H.G.	S.X.
0.45	58.3	0.79	At3g53810	824548	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	H.G.	S.X.
0.44	57.2	0.79	At3g45640	823706	ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)	Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.	O.I.	H.G.	S.X.
0.43	55.3	0.79	At2g30250	817575	WRKY25	member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.	O.I.	H.G.	S.X.
0.42	53.9	0.80	At5g13190	831158	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.42	53.9	0.78	At5g44070	834430	CAD1 (CADMIUM SENSITIVE 1)	Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.	O.I.	H.G.	S.X.
0.41	52.4	0.82	At3g11820	820355	SYP121 (SYNTAXIN OF PLANTS 121)	Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.	O.I.	H.G.	S.X.
0.39	48.4	0.78	At3g16720	820924	ATL2	RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.	O.I.	H.G.	S.X.
0.38	46.7	0.81	At2g23320	816864	WRKY15	Encodes WRKY DNA-binding protein 15 (WRKY15).	O.I.	H.G.	S.X.
0.38	46.7	0.80	At4g14365	827080	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA	O.I.	H.G.	S.X.
0.36	43.6	0.79	At3g14050	820619	RSH2 (RELA-SPOT HOMOLOG 2)	F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAV	O.I.	H.G.	S.X.
0.36	43.6	0.80	At4g36030	829759	ARO3 (ARMADILLO REPEAT ONLY 3)	Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.	O.I.	H.G.	S.X.
0.36	43.6	0.79	At1g11050	837646	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	H.G.	S.X.
0.35	41.6	0.78	At4g30210	829144	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.	O.I.	H.G.	S.X.
0.34	39.8	0.81	At1g13210	837881	ACA.l (autoinhibited Ca2+/ATPase II)	F:calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPA	O.I.	H.G.	S.X.
0.33	38.1	0.79	At5g47070	834753	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.26	24.4	0.82	At4g35600	829712	CONNEXIN 32	plant-type connexin (gap junction-type protein), a component of plasmodesmata	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
47.0 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.5 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
42.4 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.5 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.4 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5 99.7 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.8 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.8 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.6 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.4 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.2 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.1 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.0 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.5 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.0 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.9 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.1 99.7 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
28.5 99.7 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
28.3 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.0 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.1 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.9 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.1 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.7 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.7 99.5 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.7 99.5 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
18.1 99.5 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.6 99.3 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4 99.3 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.0 99.3 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.3 99.3 E-MEXP-807-raw-cel-1173273144
10.8 99.2 E-MEXP-807-raw-cel-1173273252
10.1 99.2 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.7 99.1 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
9.5 99.1 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
9.4 99.1 E-MEXP-546-raw-cel-863289424
9.2 99.1 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
8.6 99.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
52.4	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
47.0	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.5	99.8	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
42.4	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.5	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.4	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5	99.7	GSM133757	Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.8	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.8	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.6	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.4	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.2	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.1	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.0	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.5	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.0	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.9	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.1	99.7	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
28.5	99.7	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
28.3	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.0	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.1	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.9	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.1	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.7	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.7	99.5	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.7	99.5	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
18.1	99.5	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.6	99.3	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4	99.3	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.0	99.3	GSM133957	Fukuda_1-2_0B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.3	99.3	E-MEXP-807-raw-cel-1173273144
10.8	99.2	E-MEXP-807-raw-cel-1173273252
10.1	99.2	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.7	99.1	GSM10454	WT Post-Mature Green Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
9.5	99.1	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
9.4	99.1	E-MEXP-546-raw-cel-863289424
9.2	99.1	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
8.6	99.0	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.075 6 GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
0.062 2 GO:0009626 The rapid, localized death of plant cells in response to invasion by a pathogen.
0.061 1 GO:0000169 Any process that initiates the activity of the inactive enzyme MAP kinase activity during osmolarity sensing.

SF	Genes	GO ID	Process Name
0.075	6	GO:0010200	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
0.062	2	GO:0009626	The rapid, localized death of plant cells in response to invasion by a pathogen.
0.061	1	GO:0000169	Any process that initiates the activity of the inactive enzyme MAP kinase activity during osmolarity sensing.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.042 1 04650 Natural killer cell mediated cytotoxicity
0.034 1 00860 Porphyrin and chlorophyll metabolism
0.025 1 04130 SNARE interactions in vesicular transport

SF	Genes	KEGG ID	Pathway name
0.042	1	04650	Natural killer cell mediated cytotoxicity
0.034	1	00860	Porphyrin and chlorophyll metabolism
0.025	1	04130	SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At4g01010
Gene name	ATCNGC13
Module size	32 genes
NF	0.44
%ile	62.4

Co-expression analysis

Gene ID At4g01010 Gene name ATCNGC13 Module size 32 genes NF 0.44 %ile 62.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.042104650Natural killer cell mediated cytotoxicity0.034100860Porphyrin and chlorophyll metabolism0.025104130SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At4g01010

Gene name ATCNGC13

Module size 32 genes

NF 0.44

%ile 62.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.042 1 04650 Natural killer cell mediated cytotoxicity
0.034 1 00860 Porphyrin and chlorophyll metabolism
0.025 1 04130 SNARE interactions in vesicular transport

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays