Co-expression analysis

Gene ID At3g60300
Gene name RWD domain-containing protein
Module size 5 genes
NF 0.21
%ile 20.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2624.41.00At3g60300825201RWD domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFO.I.H.G.S.X.
0.3338.10.88At4g09830826572-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3338.10.87At5g20520832174WAV2 (WAVY GROWTH 2)Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).O.I.H.G.S.X.
0.2014.40.86At5g63190836440MA3 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.146.80.86At1g05890837099zinc finger protein-relatedF:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
95.199.9E-ATMX-35-raw-cel-1574334800
74.999.9GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
69.799.9E-ATMX-35-raw-cel-1574334832
68.099.9E-MEXP-849-raw-cel-1181980998
65.799.8E-MEXP-849-raw-cel-1181980990
59.399.8GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
47.099.8E-ATMX-35-raw-cel-1574334816
44.799.8GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
34.499.7GSM10445WT 24-Hr Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
33.199.7GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
32.499.7GSM10446WT 24-Hr Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
31.699.7GSM133315RIKEN-LI3AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
27.599.7GSM10477lec1-1 24-Hr Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
25.299.6GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
24.399.6GSM10478lec1-1 24-Hr Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
23.199.6E-MEXP-849-raw-cel-1181980982
21.699.6GSM133316RIKEN-LI3BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
21.599.6GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
20.799.6GSM133312RIKEN-LI1BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
19.799.6GSM133314RIKEN-LI2BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
19.699.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.399.3GSM10441WT Ovule 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
12.199.3GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
11.999.3E-MEXP-849-raw-cel-1181980854
10.199.2GSM299408pkl Mutant Germinating Seeds With Uniconazole Treatment Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
9.499.1GSM299409pkl Mutant Germinating Seeds With Uniconazole Treatment Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
9.499.1GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
9.299.1GSM299340pkl Mutant Germinating Seeds With Uniconazole Treatment Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
9.199.1GSM299410pkl Mutant Germinating Seeds With Uniconazole Treatment Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
9.099.1GSM133318RIKEN-LI4BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
9.099.1E-MEXP-849-raw-cel-1181980838
8.799.0GSM62704arf6 arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
8.799.0GSM299341pkl Mutant Germinating Seeds With Uniconazole Treatment Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1331GO:0009415A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water stimulus.Link to AmiGO
0.1051GO:0009638The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.Link to AmiGO
0.0951GO:0009958The orientation of plant parts towards gravity.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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